SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene784

Length: 905 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene784 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3789	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	Os01g0570500 protein n=3 Tax=Oryza sativa RepID=Q656Y0_ORYSJ	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	74%
Blast2go	ATP binding	GO:0005524	Molecular Function	74%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	74%
Blast2go	mitochondrion	GO:0005739	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Domain of unknown function DUF71, ATP-binding domain	IPR002761	-	-
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	YjgF/Yer057p/UK114 family	IPR006175	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Endoribonuclease L-PSP/chorismate mutase-like	IPR013813	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUC1

Fln msg: Distance to subject end: 132 aas, your sequence is shorter than subject: 301 - 481

Fln protein: CYESKVYRHLYGGVGIPNIRWFGTEGDYNIIVLDLLGPSLEDLFLFCGRRFSLKTVLMLADQLIERVEYIHSKSFMHRDMKPDNFLMGLGQKANQVYVIDFGLAKKFQDPVTLRHIHFRANKSLTGTARYASVNTHNGIEQSRRDDIESLGYVLMYFLRGSLPWQGLKAANKKQKYDKICQKKIATPIESLCKSHPTEFALYFQHCKSLAFDDTPDYVYLKGLFQDLFKREGFKYDYVFDWTILKYQQAQSSGAVPRLPPAQGGTSSGATPSAADMVAGVKDGHDATETAEPAGEALKVGF

Protein Length: 302

Fln nts: AATGTTATGAATCTAAAGTGTATAGACATCTTTATGGAGGAGTTGGTATTCCAAACATCAGATGGTTTGGGACAGAAGGAGATTATAATATTATAGTTCTAGATTTGCTGGGTCCCAGCCTAGAAGATTTATTTCTGTTTTGTGGGCGTAGATTCTCGCTGAAGACTGTATTAATGTTAGCTGATCAGCTGATTGAGAGGGTGGAATATATACATTCAAAATCATTTATGCACAGAGACATGAAGCCTGATAATTTTCTTATGGGGCTTGGTCAGAAAGCAAATCAGGTCTACGTGATTGATTTCGGTCTTGCAAAGAAGTTCCAAGACCCAGTGACCCTACGTCATATTCACTTCAGGGCAAACAAAAGTTTAACTGGAACTGCACGCTATGCAAGTGTCAATACTCACAATGGCATCGAGCAAAGCCGAAGGGATGATATTGAGTCTCTTGGATATGTTCTCATGTACTTCTTAAGGGGAAGCCTTCCTTGGCAAGGTCTGAAGGCAGCAAATAAGAAGCAAAAGTATGATAAAATATGTCAGAAGAAGATAGCTACCCCTATTGAATCATTATGCAAGTCCCATCCGACAGAGTTTGCATTGTACTTTCAACATTGCAAGTCTCTGGCTTTTGATGACACGCCAGATTACGTATATTTGAAGGGCTTGTTCCAAGATTTGTTTAAACGTGAAGGTTTCAAGTATGATTATGTGTTCGATTGGACCATCCTAAAATATCAACAAGCACAAAGTTCCGGAGCTGTACCACGGTTGCCTCCTGCACAGGGAGGTACAAGCAGTGGAGCAACACCATCGGCTGCTGACATGGTTGCAGGAGTAAAAGATGGCCATGATGCAACTGAAACTGCAGAACCTGCAGGAGAAGCTCTCAAAGTAGGTTTT

Fln Alignment:

Contig784___YESKVYRHLYGGVGIPNIRWFGTEGDYNIIVLDLLGPSLEDLFLFCGRRFSLKTVLMLADQLIERVEYIHSKSFMHRDMKPDNFLMGLGQKANQVYVIDFGLAKKFQDPVTLRHIHFRANKSLTGTARYASVNTHNGIEQSRRDDIESLGYVLMYFLRGSLPWQGLKAANXXXXXXXXXXXXIATPIESLCKSHPTEFALYFQHCKSLAFDDTPDYVYLKGLFQDLFKREGFKYDYVFDWTILKYQQAQSSGAVPRLPPAQGGTSSGATPSAADMVAGVKDGHD
A9NUC1________________YEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPVSHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATPIEVLCKTYPSEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVLDWTILKYQQTQMANTPPPSIGAAVGSSSRA-PPVADKSSGGQDGRD

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
383	25			75	0.996473
384	25			75	0.996473
385		33	66		0.997452
386	33	66			0.997452
684		20	80		0.995493
718		33	66		0.997452
719	33	66			0.997452
721			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain