SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene756

Length: 564 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene756
TGCAAGAAGAATACTTCAAGAACATGTGAAGCCGCTGCTCGATCTGGCCAAAGTCACCTTTACTTTACAAGAACTAAATTTCAGCTCCATGCAAAAGATATTGCAAAGACAATGGACCTATCACAATACGATGGCATTCTTTGTGTCAGCGGGGATGGTATTCTTGTTGAGGTTGTAAATGGTTTGTTGGAGAGATCTGATTGGGAGGATGCAATAAAGATGCCCATTGGAATCATTCCAGCTGGTACAGGAAATGGTATGGTCAAATCTTTGATGGATGATGCTGATGAGCCTTGTACTGCTGCAAATGCAACTTATACAGTCATCAAAGGCCACAAGCGACAATTAGATGTGGCCACAGTTGTGCAGGGCCATGCAAGATTTTTCAGTGTCTTGATGCTTACATGGGGTTTGATAGCTGATGTTGACATTGAATCAGAGAAGTATCGATGGATGGGAAGCATGCGTCTTGATTTTTATAGTTTATTGCGTATAGCACGTTTACGACATTACTCTGGAAGCGTTTCCTTTATTCCTGCTCCTGGATACGAAGGATATGACATT

Ace file of the UniGene biog3_v1.0_unigene756 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1775	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	sphingosine kinase 1 [Arabidopsis thaliana] gb\|AAM91597.1\| putative protein [Arabidopsis thaliana] gb\|AAP31965.1\| At4g21540 [Arabidopsis thaliana] gb\|AEE84465.1\| sphingosine kinase 1 [Arabidopsis thaliana]	-	-	46%
FL-Next	sp=Sphingoid long-chain bases kinase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	37%
Blast2go	protein	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sphinganine kinase.	EC:2.7.1.91	-	0.0	67%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sphingolipid metabolism	00600		0.0	67%
Blast2go	Metabolic pathways	01100		0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	seed germination	GO:0009845	Biological Process	67%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	67%
Blast2go	phosphorylation	GO:0016310	Biological Process	67%
Blast2go	D-erythro-sphingosine kinase activity	GO:0017050	Molecular Function	67%
Blast2go	sphinganine kinase activity	GO:0008481	Molecular Function	67%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	0.0	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LRB0

Fln msg: Distance to subject end: 313 aas, your sequence is shorter than subject: 188 - 763

Fln protein: CKKNTSRTCEAAARSGQSHLYFTRTKFQLHAKDIAKTMDLSQYDGILCVSGDGILVEVVNGLLERSDWEDAIKMPIGIIPAGTGNGMVKSLMDDADEPCTAANATYTVIKGHKRQLDVATVVQGHARFFSVLMLTWGLIADVDIESEKYRWMGSMRLDFYSLLRIARLRHYSGSVSFIPAPGYEGYDI

Protein Length: 189

Fln nts: TGCAAGAAGAATACTTCAAGAACATGTGAAGCCGCTGCTCGATCTGGCCAAAGTCACCTTTACTTTACAAGAACTAAATTTCAGCTCCATGCAAAAGATATTGCAAAGACAATGGACCTATCACAATACGATGGCATTCTTTGTGTCAGCGGGGATGGTATTCTTGTTGAGGTTGTAAATGGTTTGTTGGAGAGATCTGATTGGGAGGATGCAATAAAGATGCCCATTGGAATCATTCCAGCTGGTACAGGAAATGGTATGGTCAAATCTTTGATGGATGATGCTGATGAGCCTTGTACTGCTGCAAATGCAACTTATACAGTCATCAAAGGCCACAAGCGACAATTAGATGTGGCCACAGTTGTGCAGGGCCATGCAAGATTTTTCAGTGTCTTGATGCTTACATGGGGTTTGATAGCTGATGTTGACATTGAATCAGAGAAGTATCGATGGATGGGAAGCATGCGTCTTGATTTTTATAGTTTATTGCGTATAGCACGTTTACGACATTACTCTGGAAGCGTTTCCTTTATTCCTGCTCCTGGATACGAAGGATATGACATT

Fln Alignment:

Contig756___HAKDIAKTMDLSQY-DGILCVSGDGILVEVVNGLLERSDWEDAIKMPIGIIPAGTGNGMVKSLMDDADEPCTAANATYTVIKGHKRQLDVATVVQGHARF--FSVLMLTWGLIADVDIESEKY-RWMGSMRLDFYSLLRIARLRHYSGSVSFIPA
Q9LRB0________________HARELASTVDINLCSDGIICVGGDGIINEVLNGLLTRSNPKEGVSIPIGIVPAGSDNSLVWTVLGVRD-PISAA---LSIVKGGLTATDVFAVEWIHTGIIHFGMTVSYYGFVSDVLELSEKYQKRFGPLRYFVAGFLKFMCLPKYSYEVEYLPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain