SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene738

Length: 540 nt

UniGene Fasta

>biog3_v1.0_unigene738
AATGTAGTTATTCCTCTTCAGCTGCACCACTAGGCGTCTTCTGTTATCTCTTCAATCAGCGTTCTGCCTATTTCTGTTGTGATGTCATCGGTTCGTGCCTTTTTAATTGCAGTTTACCCATCAAAAGCTTTAGCGCTCATCAGAGAGATCTAAGACAAAACTGCATGTTTGGAAGAGACCATTGCTTCATTTTCTGCTTTGTTTTGTTCTTGGATTTCTGATCGGATTCACCCCCTTTAGCATGGAGAATTTTTCAACAAATCTTACCTCTAAACCACAAGGGTTTCCAATTGAGCTAAAATCGATACCGACAAATGCTGAGCAAGATTTCAGTCAAGTTGGAAACAGAGGAAGGACGATTGAAACTATAACGACGGAGAGAACAAAGAATTTGGAATTAAAGGATCAGCAGGAGAAAGAAGCTGAAGTATTAGGTGTTCGTGGTGAGAAGATGGATCCCTTGGTTGGGTTATCTCCGGTTAAGATCTTAGATTTTGTGCCTCGCAAACTTCTTATTGTTGTGACTCCAACATATAACCG

Ace file of the UniGene biog3_v1.0_unigene738

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20307	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	nucleotide-diphospho-sugar transferase domain-containing protein [Arabidopsis thaliana] ref\|NP_564290.2\| nucleotide-diphospho-sugar transferase domain-containing protein [Arabidopsis thaliana] sp\|Q9SXC4.2\|IRX9H_ARATH RecName: Full=Probable beta-1,4-xylosy	-	-	56%
FL-Next	sp=Probable beta-1,4-xylosyltransferase IRX9; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	beta- -	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	glucuronoxylan biosynthetic process	GO:0010417	Biological Process	72%
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	72%
Blast2go	xylosyltransferase activity	GO:0042285	Molecular Function	72%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 43	IPR005027	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9ZQC6

Fln msg: Distance to subject end: 214 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 135 - 351

Fln protein: RSSERSKTKLHVWKRPLLHFLLCFVLGFLIGFTPFSMENFSTNLTSKPQGFPIELKSIPTNAEQDFSQVGNRGRTIETITTERTKNLELKDQQEKEAEVLGVRGEKMDPLVGLSPVKILDFVPRKLLIVVTPTYN

Protein Length: 136

Fln nts: AATGTAGTTATTCCTCTTCAGCTGCACCACTAGGCGTCTTCTGTTATCTCTTCAATCAGCGTTCTGCCTATTTCTGTTGTGATGTCATCGGTTCGTGCCTTTTTAATTGCAGTTTACCCATCAAAAGCTTTAGCGCTCATCAGAGAGATCTAAGACAAAACTGCATGTTTGGAAGAGACCATTGCTTCATTTTCTGCTTTGTTTTGTTCTTGGATTTCTGATCGGATTCACCCCCTTTAGCATGGAGAATTTTTCAACAAATCTTACCTCTAAACCACAAGGGTTTCCAATTGAGCTAAAATCGATACCGACAAATGCTGAGCAAGATTTCAGTCAAGTTGGAAACAGAGGAAGGACGATTGAAACTATAACGACGGAGAGAACAAAGAATTTGGAATTAAAGGATCAGCAGGAGAAAGAAGCTGAAGTATTAGGTGTTCGTGGTGAGAAGATGGATCCCTTGGTTGGGTTATCTCCGGTTAAGATCTTAGATTTTGTGCCTCGCAAACTTCTTATTGTTGTGACTCCAACATATAACCG

Fln Alignment:

Contig738___SSERSKTKLHVWKRPLLHFLLCFVLGFLIGFTPFSMENFSTN
Q9ZQC6________________SLERSKKKAQVWKKAVIHFSLCFVMGFFTGFAPAGKASFFSN

SNPs (tot: 3)

Position	A %	G %	T %	Probability
203	33		66	0.997452
204	33		66	0.997452
251		20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain