SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene688

Length: 433 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene688
GCCACTGCTGTAATTGTCCACAGTGCAAGTGCAATGTGCTTGATTGACTTTGGTAAACCTGTAAGGCATGATGAGAATGATTTAACAAATGGAGGATCTTTCGTGTTGGACAATTCCAACAATACCAAAAATGCGTTAGCCAACGGGAAAATGAAAAAGCCAAATCACAAGGCAACGTTAACAGACAATAATTTTGTAATTGTACCGTTTAGGGATCCTGTTCTCTTTCTGGCACACTTGTCTGAACAATCTATTCTTGTTGTCGAGAAGCCCTGGGTGGACGTTTTGCAGAATTTCCGAGCTCCAGTATATAGACATCTTTATGGAACATAAGAAACATGATTATGATATCCTTCAATGCAGATCGGGATCATTCATCTCAGAGCATTGCTTTTCCCCAGAAATCTCAGTATTGGGAAGGTTCTGTTACATT

Ace file of the UniGene biog3_v1.0_unigene688 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1544	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AEE82568.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	49%
Blast2go	transducin wd40 domain-containing protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	lyase activity	GO:0016829	Molecular Function	0.0	63%
Blast2go	binding	GO:0005488	Molecular Function	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	EGF-like, alliinase	IPR006947	-	-
Sma3	Allinase, C-terminal	IPR006948	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9IBQ2

Fln msg: your sequence is shorter than subject: 111 - 818

Fln protein: ATAVIVHSASAMCLIDFGKPVRHDENDLTNGGSFVLDNSNNTKNALANGKMKKPNHKATLTDNNFVIVPFRDPVLFLAHLSEQSILVVEKPWVDVLQNFRAPVYRHLYGT*

Protein Length: 112

Fln nts: GCCACTGCTGTAATTGTCCACAGTGCAAGTGCAATGTGCTTGATTGACTTTGGTAAACCTGTAAGGCATGATGAGAATGATTTAACAAATGGAGGATCTTTCGTGTTGGACAATTCCAACAATACCAAAAATGCGTTAGCCAACGGGAAAATGAAAAAGCCAAATCACAAGGCAACGTTAACAGACAATAATTTTGTAATTGTACCGTTTAGGGATCCTGTTCTCTTTCTGGCACACTTGTCTGAACAATCTATTCTTGTTGTCGAGAAGCCCTGGGTGGACGTTTTGCAGAATTTCCGAGCTCCAGTATATAGACATCTTTATGGAACATAA___GAAACATGATTATGATATCCTTCAATGCAGATCGGGATCATTCATCTCAGAGCATTGCTTTTCCCCAGAAATCTCAGTATTGGGAAGGTTCTGTTACATT

Fln Alignment:

Contig688___AVIVHSASAMCLIDFGKPV-RHDENDLTNGGSFVLDNSNNTKNALANGKMK---KPNHKATLTDNNFVIVPFRDPVLFLAHLSEQSILVVEKPWVDVLQNFRA-PVYRHLYGT
B9IBQ2________________SVIIYSARAMCLIDFGMPVDREEDSDLVNGQHSPLKKLQTTT---MNGGLKRRLKEYQPETKLRKNFEILAFRDPVLFIGHLSENSILIMDKPWMDVVKTFDAQPVHRHIFGT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
305			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain