SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene686

Length: 1035 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene686 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16691	24/24

Source	Descriptions	Term	Type	Identity
AutoFact	agmatine deiminase [Arabidopsis thaliana] sp\|Q8GWW7.2\|AGUA_ARATH RecName: Full=Agmatine deiminase; AltName: Full=Agmatine iminohydrolase; AltName: Full=Protein EMBRYO DEFECTIVE 1873 emb\|CAB93718.1\| putative protein [Arabidopsis thaliana] gb\|AED91261.1\| ag	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	agmatine deiminase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Agmatine deiminase.	EC:3.5.3.12	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Arginine and proline metabolism	00330		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	polyamine biosynthetic process	GO:0006596	Biological Process	0.0	82%
Blast2go	agmatine deiminase activity	GO:0047632	Molecular Function	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Agmatine deiminase	IPR017754	-	-
Sma3	Peptidyl-arginine deiminase, Porphyromonas-type	IPR007466	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL48

Fln msg: Separated hits, possible frame ERROR between 548 and 550, your sequence is shorter than subject: 340 - 367

Fln protein: ERPDNWRENGLHGQRVFAEVASAISKFENVTVCASVAQWDSARAQLPKNIRVLEMSMNDAWFRDIGPTFVVCARTSSVAGIDWNFNSWGGAEDGCYKDWSLDNLVARKIIEVERLTRFPHSMVLEGGSIHVDGEGTCITTEECLLNPNRNPHLTREAIEHQLKQYLGVTKIIWLPWGLYGDxxDTNGHIDNMCCFVRPGVVMLAWTNDEDDPQYERSLEAYSVLSKATDAQGRTLQILKMHVPDPLYMTEEEADGLQALDGKPRIAGTRLAASYINFYIANKGIVAPAFGDEKRDKEAFDVLSATFPDHEVVMVADAREIVLGGGNIHCITQQQPACLP*

Protein Length: 341

Fln nts: CTGAACGTCCTGATAATTGGCGTGAAAATGGCTTGCATGGTCAACGTGTCTTTGCTGAGGTGGCTTCTGCTATCTCAAAGTTTGAGAATGTTACAGTCTGTGCTAGTGTGGCGCAGTGGGATAGTGCACGGGCTCAGCTACCAAAAAACATTAGGGTATTGGAGATGAGCATGAATGATGCTTGGTTTAGGGACATAGGACCAACATTCGTCGTGTGTGCTAGGACTTCAAGTGTTGCGGGTATTGATTGGAACTTCAATAGTTGGGGTGGGGCTGAAGATGGCTGCTATAAGGATTGGAGCCTTGATAACCTTGTTGCTAGAAAGATCATTGAAGTTGAGAGGCTTACAAGGTTTCCACATTCCATGGTCTTGGAAGGGGGTAGTATTCATGTCGATGGAGAAGGAACTTGCATCACGACAGAAGAGTGTTTGCTTAATCCAAATCGCAACCCTCACCTTACAAGAGAGGCAATTGAGCATCAATTGAAGCAATACCTTGGGGTTACCAAAATCATTTGGCTTCCATGGGGTTTGTACGGAGATGAxxxGGATACCAATGGACACATAGATAACATGTGCTGCTTCGTAAGGCCGGGGGTGGTTATGCTGGCATGGACTAATGATGAAGATGATCCACAATATGAACGCTCACTTGAGGCTTATTCTGTTCTTTCCAAGGCTACTGATGCGCAGGGACGAACATTACAGATCCTCAAGATGCATGTACCAGATCCTCTCTACATGACAGAGGAAGAGGCAGATGGGCTTCAAGCTTTGGATGGAAAACCCAGGATTGCTGGAACCAGGCTTGCAGCCTCATATATAAACTTTTACATTGCAAACAAAGGAATTGTGGCTCCTGCATTTGGAGATGAAAAGAGAGATAAAGAAGCTTTTGATGTCCTCTCTGCAACATTTCCTGATCATGAAGTTGTAATGGTAGCTGATGCGAGAGAAATTGTGCTTGGTGGAGGTAATATACACTGCATAACGCAGCAACAACCGGCTTGCTTGCCTTGATGTATTGACAAATGG

Fln Alignment:

Contig686___ERPDNWRENGLHGQRVFAEVASAISKFENVTVCASVAQWDSARAQLPKNIRVLEMSMNDAWFRDIGPTFVVCARTSSVAGIDWNFNSWGGAEDGCYKDWSLDNLVARKIIEVERLTRFPHSMVLEGGSIHVDGEGTCITTEECLLNPNRNPHLTREAIEHQLKQYLGVTKIIWLPWGLYGDDxDTNGHIDNMCCFVRPGVVMLAWTNDEDDPQYERSLEAYSVLSKATDAQGRTLQILKMHVPDPLYMTEEEADGLQALDGKPRIAGTRLAASYINFYIANKGIVAPAFGDEKRDKEAFDVLSATFPDHEVVMVADAREIVLGGGNIHCITQQQPACL
B8LL48________________ERPDNWRESAMHGQRVFVEVASAISKFESVTVCASAAQWDSARAQLPKNIRVLEMSMNDAWFRDIGPTFVVCDRTSSVAGIDWSFNSWGGAENGCYKDWSLDSLVARKIIEVERLTRFPHSMVLEGGSIHVDGEGTCITTEECLLNPNRNPHLTREAIEHQLKHYLGVTTIIWLPWGLYGDDxDTNGHIDNMCCFVRPGVVMLAWTDDENDPQYERSLEAYSVLSKAIDAHGRTLQIIKIHVPEPLFMTEEEADGLQALDGKPRNAGTRLAASYINFYIANKGIVAPAFGDEKRDKEAVDVLTAAFPDHEVITVSGAREIVLGGGNIHCITQQQPACL

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
291	33			66	0.997452
292	33	66			0.997452
329	25		75		0.996473
331			75	25	0.996473
414	20	80			0.995493
417		80	20		0.995493
472	20		80		0.995493
473		20		80	0.995493
474	20			80	0.995493
475	80			20	0.995493
614	88			11	0.923564
615		88	11		0.923564
616	88			11	0.923564
640	10	90			0.90298
641	10			90	0.90298
643		90	10		0.90298
650	30		70		1.0
794	11	88			0.923564
797	88			11	0.923564
801	87			12	0.992554
826	11	88			0.923564
828		88		11	0.923564
829	88		11		0.923564
852	11			88	0.923564
854	11	88			0.923564
855		88		11	0.923564
890	14	85			0.993533
894	85			14	0.993533
983	33	66			0.997452
1011			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain