SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene666

Length: 1045 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene666

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene460	14/15

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sucrose phosphate syntase, putative n=1 Tax=Ricinus communis RepID=B9RWD6_RICCO	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Sucrose-phosphate synthase	IPR006380	-	-
Sma3		IPR012287	-	-
Sma3	Sucrose phosphate synthase, plant	IPR012819	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM0

Fln msg: Distance to subject end: 227 aas, your sequence is shorter than subject: 348 - 713

Fln protein: AFGECRPLKELANLTLVMGNRDDIDEMSGGNAAVLTTVLKLIDKYDLYGQVAYPKHHKQSDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHSTLTNGLLVDPHDQKAIANALLELVADKNLWNECRRNGLRNIHLFSWPEHCRKYLSRVAVCRMRHPQWQTDTLMDTTMDEESMGDSLKDVQDMSLRLSVDGEKYLGNGSLDNSAEVDKLLAAKGDPETYNQVKRILDKLKRGPPSSITEETEPKPDVNEPRAPANNVIVSNKYPALRKKRKLFVIAVDCYDDTGNVSPRMLEIIQEIIKAVRSDATAARFAGLVLSTALTVDETLGM

Protein Length: 349

Fln nts: AGCATTTGGAGAATGCCGGCCATTAAAAGAGCTGGCAAATTTGACACTGGTAATGGGAAACAGAGATGATATAGATGAAATGTCGGGAGGCAATGCAGCTGTTCTAACAACAGTTTTGAAGCTGATAGATAAGTATGACTTGTATGGACAAGTTGCTTATCCAAAGCATCACAAGCAATCAGATGTTCCAGAAATTTACCGTCTTGCTGCAAAAACAAAGGGTGTGTTTATTAATCCAGCTCTGGTGGAGCCTTTTGGTCTCACTCTCATTGAGGCAGCTGCGCATGGTTTACCGATGGTAGCTACGAAGAATGGAGGACCAGTGGACATACACAGTACTTTGACCAATGGACTATTAGTCGATCCCCATGATCAGAAGGCCATAGCAAATGCATTGCTAGAGCTTGTAGCAGACAAAAACCTATGGAATGAATGTCGCCGTAATGGGTTGAGAAACATTCACCTTTTTTCATGGCCTGAGCATTGCAGAAAATATTTGTCCCGGGTGGCTGTATGCAGGATGAGGCATCCTCAGTGGCAGACTGACACTCTAATGGATACTACTATGGATGAGGAATCGATGGGTGATTCCCTGAAGGATGTCCAGGACATGTCTCTCCGACTTTCTGTTGATGGCGAGAAATATTTGGGCAATGGTTCTCTGGATAATTCTGCGGAAGTTGACAAACTTCTGGCAGCAAAGGGCGACCCAGAAACATATAATCAGGTAAAACGAATTTTGGATAAACTGAAAAGGGGACCACCATCTTCTATCACTGAAGAAACTGAACCTAAGCCGGATGTAAATGAGCCAAGGGCTCCAGCAAATAACGTGATTGTTTCAAACAAGTATCCCGCACTGAGAAAGAAGAGGAAGCTTTTTGTTATAGCTGTGGACTGCTATGATGACACTGGTAATGTATCTCCCCGAATGTTGGAAATCATTCAGGAGATAATCAAAGCTGTGCGTTCTGATGCAACAGCAGCAAGATTTGCAGGTCTTGTGCTATCAACTGCATTGACAGTTGATGAAACTCTGGGAATG

Fln Alignment:

Contig666___AFGECRPLKELANLTLVMGNRDDIDEMSGGNAAVLTTVLKLIDKYDLYGQVAYPKHHKQSDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHSTLTNGLLVDPHDQKAIANALLELVADKNLWNECRRNGLRNIHLFSWPEHCRKYLSRVAVCRMRHPQWQXXXXXXXXXXEESMGDSLKDVQDMSLRLSVDGEKYLGNGSLDNSAEVDKLLAAKGDPETYNQVKRILDKLKRGPPSSITEETEPKPDVNEPRAPANNVIVSNKYPALRKKRKLFVIAVDCYDDTGNVSPRMLEIIQEIIKAVRSDATAARFAGLVLSTALTVDETLGM
B8LLM0________________AFGECRPLKELANLTLVMGNRDDIDGMSGGNGAVLTTVLKLIDKYDLYGQVAYPKHHRQSDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHTTLNNGLLVDPHDQKAIANALLELVADKNLWNECRRNGLRNIHLFSWPEHCRKYLSRVALCRMRHPQWQTDTLMDTTMEEESMGDSLKDVQDMSLRLSVDGDKYSVYGSLDNSAEVDKLLAAKGDPELYNQVKRVLDKLKRAPPSSTTEETEPKPDVNEPRAPANNVIASNKYPALRKKRKLFVIAVDCYDDNGNVSPRMLEIIQEIFKAVRSDATAARFAGLVLSTALTVDETLGM

SNPs (tot: 8)

Position	A %	C %	T %	Probability
738	16		83	0.994512
739	83	16		0.994512
741	83		16	0.994512
742	83		16	0.994512
863	25	75		0.996473
864	25	75		0.996473
865		75	25	0.996473
867		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain