SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene659

Length: 1039 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene659 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1175	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	DUF482 domain containing protein	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF482	IPR007434	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQC8

Fln msg: STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 346 - 473

Fln protein: MYTGCAVQETGWLPQHITATDQDGIVLGVVPLYVKSHSNGEYVFDHSWADAYYRFGSSYYPKLQCCVPFTPVTGQRILVRDTCYKDQIFDKLLIAMKLLTDKLQMSSLHITFPTKEEWEKVNQFGFLQRIGMQYHWKNRDYKSFDDFLMDLKQSKRKTIRQERKKILASNLRMRRLRGYEIKAHHWDSFYRFYCNTTDNKWGRAYLTREFFHMIGSKLGDRVLLVVAEDGEKLVAGALNLIGGDCLFGRLWGCLSEAYYPNLHFEACYYQAIEAAIEWNLSTVEAGAQGEHKVQRGYMPVTTYSCHYIPDKSFKQAIGDFLTRETPQVNLVTQLLADSGPFKDGDI

Protein Length: 347

Fln nts: AATGTATACAGGGTGTGCTGTTCAGGAAACGGGATGGTTACCTCAGCACATCACTGCAACTGATCAAGATGGTATTGTGCTAGGTGTTGTTCCACTTTATGTAAAAAGCCACTCAAATGGTGAATATGTATTTGATCACTCCTGGGCCGATGCTTACTATCGGTTTGGTTCTTCTTACTACCCAAAGCTACAGTGTTGTGTGCCATTTACGCCAGTAACAGGTCAACGGATACTAGTTCGTGATACTTGTTACAAGGATCAGATTTTTGACAAGCTTCTGATTGCCATGAAGCTACTTACTGATAAGTTGCAGATGTCATCACTACATATAACATTTCCTACAAAAGAAGAATGGGAGAAAGTGAATCAATTTGGTTTTCTACAAAGGATTGGAATGCAGTACCATTGGAAAAATCGTGACTATAAGAGCTTTGATGATTTTTTAATGGACTTGAAGCAGAGCAAAAGAAAAACTATTCGGCAAGAGCGCAAAAAGATTCTAGCCTCAAACTTAAGGATGAGACGTCTTCGTGGATATGAAATAAAGGCACATCACTGGGATTCCTTCTACAGATTCTACTGCAACACCACTGACAACAAGTGGGGTCGTGCTTATCTTACAAGGGAATTTTTCCACATGATAGGTTCTAAGTTGGGTGATCGTGTGTTGCTTGTTGTTGCTGAAGATGGAGAGAAACTTGTAGCTGGGGCATTGAATCTTATTGGAGGAGATTGTTTGTTTGGTCGCCTTTGGGGTTGCCTTTCAGAGGCTTATTATCCAAACTTGCACTTTGAAGCTTGCTATTACCAAGCAATTGAAGCAGCCATTGAATGGAATCTAAGTACGGTTGAAGCTGGAGCTCAAGGAGAACACAAAGTCCAACGTGGTTACATGCCTGTGACAACGTATAGCTGTCATTACATTCCTGATAAAAGTTTTAAACAAGCAATCGGTGATTTCTTAACTCGTGAGACTCCTCAGGTGAATCTTGTAACGCAATTATTGGCAGATTCTGGGCCTTTCAAGGATGGAGACATT

Fln Alignment:

Contig659___TGCAVQETGWLPQHITATDQDGIVLGVVPLYVKSHSNGEYVFDHSWADAYYRFGSSYYPKLQCCVPFTPVTGQRILVRDTCYKDQIFDKLLIAMKLLTDKLQMSSLHITFPTKEEWEKVNQFGFLQRIGMQYHWKNRDYKSFDDFLMDLKQSKRKTIRQERKKILASNLRMRRLRGYEIKAHHWDSFYRFYCNTTDNKWGRAYLTREFFHMIGSKLGDRVLLVVAEDGEKLVAGALNLIGGDCLFGRLWGCLSEAYYPNLHFEACYYQAIEAAIEWNLSTVEAGAQGEHKVQRGYMPVTTYSCHYIPDKSFKQAIGDFLTRETPQVNL
B8LQC8________________TGCAVQETGWLPQHIVAVDQDGTVLGVVPLYVKSHSYGEFVFDHSWADAYYRFGSSYNPKLQCCVPFTPVTGQRILVRDTCYKDQIFDKLLIAMKLLTDKFQMSSLHITFPTKEEWEKVSQFGFLQRIGMQYHWKNRDYKSFDDFLMDLKQSKRKTIRQERKKILAQNLRMRRLRGYEIKAHHWDSFYRFYCNTADNKWGRAYLTREFFHMIGSKLGDHVLLVVAEDGEKLVAGALNLIGGDSLFGRLWGCLSEAYYPNLHFEACYYQAIEAAIEWNLSTVEAGAQGEHKVQRGYMPVTTYSCHYIPDKSFKHAIGDFLTRETPQVHI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
275	33		66		0.997452
655	33	66			0.997452
656	33	66			0.997452
658			33	66	0.997452
929	20			80	0.995493
930		25	75		0.996473
932			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain