SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene656

Length: 1042 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene656

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25731	10/11

Source	Descriptions	Term	Type	Identity
AutoFact	putative polyprenyl diphosphate synthase [Oryza sativa Japonica Group] gb\|AAS16899.2\| putative polyprenyl diphosphate synthase [Oryza sativa Japonica Group] dbj\|BAG90037.1\| unnamed protein product [Oryza sativa Japonica Group] gb\|EEE64831.1\| hypothetical	-	-	76%
FL-Next	tr=Geranyl diphosphate synthase 3; Picea abies (Norway spruce) (Picea excelsa).	-	-	42%
Blast2go	prenyl transferase-like	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Polyprenyl synthetase	IPR000092	-	-
Sma3	Polyprenyl synthetase-related	IPR017446	-	-
Sma3	Solanesyl diphosphate synthase	IPR014120	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B1A9K7

Fln msg: Distance to subject end: 163 aas, your sequence is shorter than subject: 280 - 427

Fln protein: MGSLTASSLQLCWGGVDNRGMSGRASSANVVSQNGKWGCSSNSSKNGFASMYGQRKNVCCKFSSVDMDRADSILNSVVNPTTSDLADSDELQDLNKPTVASSTLTGKLDSGNRMSLSSLMTAVADDLQILNNNLQAVVGAENPMLTSAAEQIFSAGGKRMRPALVFLVSRATAQMAGLKDVTPQHRRLAEIIEMIHTASLIHDDVLDESDVRRGKKTIHQLYGTRVAVLAGDFLFAQSSWYLANLENIEVIKLISQVIKDFANGEIKQASSLFDCDISLQ

Protein Length: 281

Fln nts: AATGTTTTAATAAATGAAGGACCAGTACGCAGAGTAAACAATTTTGTTTCATATTTAAATAAATGGGCTTTCAGCAGTCCTTTACTATAGTTCTTCAGTTATTTCAGCGCTCCGTTTGCGTAGACTCGGAAGCCATTGGGCTGGAGCTGAAGTATTGATTGATACAGTCTATACCATTTTGAATTTAATAGTTTCAGGAA_-_ATGGGTTCATTGACGGCCTCTAGCTTGCAGCTCTGTTGGGGTGGAGTGGATAACAGAGGGATGTCTGGCAGGGCGTCGTCCGCAAACGTGGTGTCTCAGAATGGGAAATGGGGATGTAGCAGCAATAGCAGCAAGAATGGGTTTGCGAGCATGTATGGGCAGAGGAAGAATGTGTGCTGCAAGTTTTCTTCTGTGGATATGGATAGGGCGGATAGCATACTCAACAGCGTGGTTAATCCCACTACATCTGATTTGGCGGATTCAGATGAACTTCAAGATCTAAACAAACCTACTGTTGCATCTTCAACACTAACAGGCAAATTAGATTCTGGTAACAGGATGTCCCTGTCCTCGTTGATGACAGCAGTTGCCGATGATCTACAAATCTTGAATAACAACCTTCAAGCGGTGGTTGGTGCAGAAAATCCAATGCTAACATCTGCAGCAGAGCAGATATTTAGTGCAGGAGGGAAGAGGATGAGGCCTGCTCTAGTCTTCCTTGTATCAAGGGCTACTGCACAGATGGCAGGCCTAAAGGATGTCACTCCACAACACCGACGACTTGCAGAAATTATTGAGATGATACACACAGCTAGCTTGATTCATGATGACGTGTTGGATGAAAGTGATGTGAGAAGAGGGAAGAAGACCATTCACCAACTCTATGGCACTCGAGTTGCAGTATTAGCTGGAGACTTTCTGTTTGCCCAGTCATCATGGTATCTCGCAAATTTGGAAAATATTGAAGTCATCAAGCTCATTAGTCAGGTAATTAAGGATTTTGCAAATGGCGAAATAAAGCAAGCTTCAAGCCTTTTTGATTGCGACATTTCTCTTCAAGA

Fln Alignment:

Contig656___VADDLQILNNNLQAVVGAENPMLTSAAEQIFSAG--GKRMRPALVFLVSRATAQMAGLKDVTP-------------QHRRLAEIIEMIHTASLIHDDVLDESDVRRGKKTIHQLYGTRVAVLAGDFLFAQSSWYLANLENIEVIKLISQVIKDFANGEIKQASS
B1A9K7________________VADELSILANRLRSMILTEIPKLGTAAEYFFKLGVEGKRFRPMVLLLM--ASSLTIGIPEVAADCLRKGLDEEQRLRQQRIAEITEMIHVASLLHDDVLDDADTRRGVGSLNFVMGNKLAVLAGDFLLSRASVALASLKNTEVVELLSKVLEHLVTGEIMQMTN

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
222	33			66	0.997452
228	33			66	0.997452
229			66	33	0.997452
230		66		33	0.997452
236	33			66	0.997452
238			33	66	0.997452
240	33		66		0.997452
241	33		66		0.997452
294	25			75	0.996473
295	25		75		0.996473
297		75	25		0.996473
344		25	75		0.996473
345	25			75	0.996473
785		20		80	0.995493
786	20		80		0.995493
787	80			20	0.995493
868	40			60	1.0
869		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain