SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene655

Length: 915 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene655 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene112	11/12
SustainPine v2.0	sp_v2.0_unigene24915	1/12

Source	Descriptions	Term	Type	Identity
AutoFact	Methionine aminopeptidase n=1 Tax=Picea sitchensis RepID=D5AA02_PICSI	-	-	91%
FL-Next	sp=Methionine aminopeptidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	methionine aminopeptidase 1b	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aminopeptidases.	EC:3.4.11.-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	N-terminal protein amino acid modification	GO:0031365	Biological Process	78%
Blast2go	proteolysis	GO:0006508	Biological Process	78%
Blast2go	metal ion binding	GO:0046872	Molecular Function	78%
Blast2go	metalloexopeptidase activity	GO:0008235	Molecular Function	78%
Blast2go	aminopeptidase activity	GO:0004177	Molecular Function	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M24, structural domain	IPR000994	-	-
Sma3	Peptidase M24, methionine aminopeptidase	IPR001714	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase M24A, methionine aminopeptidase, subfamily 1	IPR002467	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA02

Fln msg: Overlapping hits, possible frame ERROR between 662 and 629, Distance to subject end: 96 aas, your sequence is shorter than subject: 261 - 358

Fln protein: MASLLLSSIIGDPLTRTSIQPFSTVRHKLASQRGFECKPNSFVVFSKRRLSGLEEAMLINRAVEQGKVGNPGKIRKRPRLRPGKVRPRLPVPDHIIRPPYVNSSSLPELANEPQIHDAEGIECMRASCELAARVLEYAGTLVKPSVTTDEIDKAVHKMIIDSGAYxxxxxxxxxxxxxCTSVNECLCHGIPDSRQLQHGDIINIDVTVYLNGYHGDTSRTFLCGNVDDEAKRLVKVTEECLYKAISVCKAGVGFKQIGKRI

Protein Length: 262

Fln nts: AATGTAACTGCAATAAACTATAAAGCAATGGAAGGAGTTAGCATGAGCTGAGTTGGATTCACTGCATTGAACCCAACATCCCTTAATTGGTTTAGTCCAAAGATTTGTCATCCCTTCACTGATTCAGTCCA_-_ATGGCTTCCTTGCTGTTGTCATCCATCATTGGAGACCCGCTGACTCGCACAAGTATCCAACCTTTCTCCACAGTTCGACACAAACTGGCTTCACAGCGAGGGTTTGAATGCAAGCCGAACAGTTTTGTGGTATTTTCTAAAAGAAGGCTTTCTGGGTTAGAGGAAGCCATGTTGATAAATAGAGCTGTTGAGCAGGGCAAGGTAGGAAATCCAGGAAAGATACGGAAACGTCCTCGTTTAAGGCCTGGGAAAGTGCGACCTCGCCTACCTGTGCCTGACCATATCATAAGGCCACCCTATGTGAACTCCAGTTCTTTGCCTGAGCTTGCAAATGAGCCACAGATTCATGATGCTGAGGGAATAGAATGCATGAGAGCTTCATGCGAACTCGCGGCACGTGTCTTAGAGTATGCTGGGACATTAGTCAAGCCATCAGTAACGACAGATGAAATTGACAAAGCTGTCCACAAAATGATCATTGATTCTGGGGCGTATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGCACATCTGTCAATGAGTGTCTGTGTCATGGGATACCTGATTCTCGTCAGTTACAGCATGGCGACATTATAAACATTGATGTAACTGTCTATTTGAATGGGTACCATGGTGATACATCAAGAACTTTCTTATGTGGAAATGTTGACGATGAAGCTAAGCGACTTGTAAAGGTCACTGAGGAGTGCTTGTATAAAGCAATCTCAGTTTGCAAAGCAGGAGTGGGTTTCAAGCAAATCGGCAAAAGAATAAA

Fln Alignment:

Contig655___MASLLLSSIIGDPLTRTSIQPFSTVRHKLASQRGFECKPNSFVVFSKRRLSGLEEAMLINRAVEQGKVGNPGKIRKRPRLRPGKVRPRLPVPDHIIRPPYVNSSSLPELANEPQIHDAEGIECMRASCELAARVLEYAGTLVKPSVTTDEIDKAVHKMIIDSGAYPxxxxxxxxxxxVCTSVNECLCHGIPDSRQLQHGDIINIDVTVYLNGYHGDTSRTFLCGNVDDEAKRLVKVTEECLYKAISVCKAGVGFKQIGKRI
D5AA02________________MASVLLSSFVGDPLAATSIQPFSTVRLKLASQRGFECKPNRLLVVSKRRLSGLEEAMLINRAIEQGKVENPGKLRKRPPLRPGKVRPRLPVPDHIIRPPYVNSSSLPELANEPQMHDAEGIECMRASCQLAARVLEYAGTLVKPSVTTDEIDKAVHKMIIDAGAYPxxxxxxxxxxxVCTSVNECLCHGIPDSRQLQHGDIINIDVTVYLNGYHGDTSRTFLCGDVDEEAKRLVKVTEECLYRAISVCKAGVGFKQVGKKI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
148	25			75	0.996473
151		75	25		0.996473
152		75		25	0.996473
481	20		80		0.995493
715	12			87	0.992554
716	12		87		0.992554
719			87	12	0.992554
720	87			12	0.992554
732		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain