SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene646

Length: 573 nt

UniGene Fasta

>biog3_v1.0_unigene646
CAAAATTTGCGACAGTGGAAGCTTGCAGACTCTCATATTGAACAACAACGCTCTGACAGGAGAAGTCCCATCGGCTCTCGGAAATTGTCAAAACTTGTTGTGGATATCTCTGGCCAGCAACAGATTGAGTGGTACCATACCATCTTCACTGGGTCATTTGGATAAGCTGGCAATACTTCAGTTGGGTAACAACTCTCTTTCGGGTGCAATTCCTCCAGAGCTGGGCAACTGCAGCAGTTTGATATGGTTGGATCTAAATAGTAACATGTTGAACGGTTCCATACCTGCAGAGTTGTCACAGAAATCGGGTCATGTTTTAGCTGGAAATGTAGCCGGAAAATCGTTTGCTTTTGTGAGAAATGAGGGTGGAACGACCTGTCGGGGTGCTGGCGGGCTCCTGGAATTTGCTGGGATTCGGTCTGAGCAACTCCTGCTTTCACCTGTGTTACATTCATGTGAATTCACCAGAGTTTACCTGGGCACTACAGTGTACAAGTTTACAGACAATGGTACACTCATTTACTTGGACTTGTCCTACAACTCCCTTTCAGGACCTATTCCAGAAGGTACATT

Ace file of the UniGene biog3_v1.0_unigene646

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3305	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	receptor-like protein kinase BRI1-like 3 [Arabidopsis thaliana] sp\|Q9LJF3.1\|BRL3_ARATH RecName: Full=Receptor-like protein kinase BRI1-like 3; AltName: Full=BRASSINOSTEROID INSENSITIVE 1-like protein 3; Flags: Precursor dbj\|BAB01743.1\| receptor protein ki	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	serine threonine-protein kinase bri1-like 1	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	70%
Blast2go	identical protein binding	GO:0042802	Molecular Function	70%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	70%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	70%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	70%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLV1

Fln msg: Distance to subject end: 271 aas, your sequence is shorter than subject: 190 - 607

Fln protein: KICDSGSLQTLILNNNALTGEVPSALGNCQNLLWISLASNRLSGTIPSSLGHLDKLAILQLGNNSLSGAIPPELGNCSSLIWLDLNSNMLNGSIPAELSQKSGHVLAGNVAGKSFAFVRNEGGTTCRGAGGLLEFAGIRSEQLLLSPVLHSCEFTRVYLGTTVYKFTDNGTLIYLDLSYNSLSGPIPEGT

Protein Length: 191

Fln nts: CAAAATTTGCGACAGTGGAAGCTTGCAGACTCTCATATTGAACAACAACGCTCTGACAGGAGAAGTCCCATCGGCTCTCGGAAATTGTCAAAACTTGTTGTGGATATCTCTGGCCAGCAACAGATTGAGTGGTACCATACCATCTTCACTGGGTCATTTGGATAAGCTGGCAATACTTCAGTTGGGTAACAACTCTCTTTCGGGTGCAATTCCTCCAGAGCTGGGCAACTGCAGCAGTTTGATATGGTTGGATCTAAATAGTAACATGTTGAACGGTTCCATACCTGCAGAGTTGTCACAGAAATCGGGTCATGTTTTAGCTGGAAATGTAGCCGGAAAATCGTTTGCTTTTGTGAGAAATGAGGGTGGAACGACCTGTCGGGGTGCTGGCGGGCTCCTGGAATTTGCTGGGATTCGGTCTGAGCAACTCCTGCTTTCACCTGTGTTACATTCATGTGAATTCACCAGAGTTTACCTGGGCACTACAGTGTACAAGTTTACAGACAATGGTACACTCATTTACTTGGACTTGTCCTACAACTCCCTTTCAGGACCTATTCCAGAAGGTACATT

Fln Alignment:

Contig646___SLQTLILNNNALTGEVPSALGNCQNLLWISLASNRLSGTIPSSLGHLDKLAILQLGNNSLSGAIPPELGNCSSLIWLDLNSNMLNGSIPAELSQKSGHVLAGNVAGKSFAFVRNEGGTTCRGAGGLLEFAGIRSEQLLLSPVLH
B8LLV1________________SLQNLNLASNQLTGEIPNTLGQLDNLQYLVLGNNRLSGVIPPSISKIPNLIELDLSSNNLSGKIPVSLFQVHK---YNFSGNHIN------CSASSPHPCASTSSSNSGSSKRSKIGILAGTIGGGLVIILVLGLLLLLCQGRH

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
131	33		66		0.997452
132	33		66		0.997452
134	66		33		0.997452
135		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain