SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene603

Length: 454 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene603
TTATGATAAGCCCATTGATCTTCGCTCTTGCGACTTCACAAATGAAAAGAGTAATCTGAGAGGCAAATCACTCGCAGCTGCTCTTATGTCCGATGCAAAATTTGATGGTGCTGATATGTCAGAGGTCATAATGTCAAAAGCTTATGCTGTGGGGGCTAGCTTCAAAGGGGTGGACTTCTCGAATGCAGTTATTGATCGAGTAAATTTTGGGAAAGCTAATATGCAAGGTGCAGTTTTTAGAAATACAGTGCTGTCGGGGTCTACATTTGTTGATGCTAATTTGGAGGGTGCAAAATTTGAAGACACCATCATTGGCTACATAGACCTTCAGAAGCTTTGTACAAATCAAACTCTTTCAGATGAAGGCAGAGGTATATTGGGATGTAGATGATGACAGTACTAATCAAATCATTTATATAATTTTGCTTCTATGAAAATTGTATAAAGGTATTTG

Ace file of the UniGene biog3_v1.0_unigene603 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7599	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Thylakoid lumenal 17.4 kDa protein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SJT2_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	thylakoid lumenal protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentapeptide repeat	IPR001646	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTD4

Fln msg: your sequence is shorter than subject: 130 - 239

Fln protein: YDKPIDLRSCDFTNEKSNLRGKSLAAALMSDAKFDGADMSEVIMSKAYAVGASFKGVDFSNAVIDRVNFGKANMQGAVFRNTVLSGSTFVDANLEGAKFEDTIIGYIDLQKLCTNQTLSDEGRGILGCR*

Protein Length: 131

Fln nts: TTATGATAAGCCCATTGATCTTCGCTCTTGCGACTTCACAAATGAAAAGAGTAATCTGAGAGGCAAATCACTCGCAGCTGCTCTTATGTCCGATGCAAAATTTGATGGTGCTGATATGTCAGAGGTCATAATGTCAAAAGCTTATGCTGTGGGGGCTAGCTTCAAAGGGGTGGACTTCTCGAATGCAGTTATTGATCGAGTAAATTTTGGGAAAGCTAATATGCAAGGTGCAGTTTTTAGAAATACAGTGCTGTCGGGGTCTACATTTGTTGATGCTAATTTGGAGGGTGCAAAATTTGAAGACACCATCATTGGCTACATAGACCTTCAGAAGCTTTGTACAAATCAAACTCTTTCAGATGAAGGCAGAGGTATATTGGGATGTAGATGA___TGACAGTACTAATCAAATCATTTATATAATTTTGCTTCTATGAAAATTGTATAAAGGTATTTG

Fln Alignment:

Contig603___YDKPIDLRSCDFTNEKSNLRGKSLAAALMSDAKFDGADMSEVIMSKAYAVGASFKGVDFSNAVIDRVNFGKANMQGAVFRNTVLSGSTFVDANLEGAKFEDTIIGYIDLQKLCTNQTLSDEGRGILGCR
A9NTD4________________YDKPIDLRSCDFTNEKTNLRGKSLAAALMSDAKFDGADMSEVIMSKAYAVGASFKGVDFSNAVIDRVNFGKANMQDAVFRNTVLSGSTFVDANLEGAKFEDTIIGYIDLQKLCTNQTLSDEGRDILGCR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
222	33	66			0.997452
225		66		33	0.997452
258	25		75		0.996473
261		75	25		0.996473
262	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain