SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene506

Length: 1131 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene506

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6487	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	cation diffusion facilitator 8 [Stylosanthes hamata]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	metal tolerance protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	cation transport	GO:0006812	Biological Process	80%
Blast2go	transmembrane transport	GO:0055085	Biological Process	80%
Blast2go	cation transmembrane transporter activity	GO:0008324	Molecular Function	80%
Blast2go	membrane	GO:0016020	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cation efflux protein	IPR002524	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK92

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 569 and 569, your sequence is shorter than subject: 325 - 399

Fln protein: LCNNEDRLEEKHDQELQRELQHESAVNIAVNVSNFSNVLLLAFKIYATVKSGSIAIAASTLDSLLDLMAGGILWFTHLSMKNINIYKYPIGKLRVQPVGIIVFAAIMATLGFQVLIEAVRQLIEDKGSTKMSNSQLEWLYGIMLFATGVKLALWLYCRTSRSEIVRAYAKDHYFDVVTNVVGLAAAVLxxKFFWWIDPAGAIALALYTIINWSTTVFENAASLVGQTAPPEMLQKLTYLVIKHDPLIQRVDTVRAYTFGVLYFVEVDIELPEDLPLKVAHTIGETLQIKIENLPEVERAFVHLDFECDHKPEHSVLTKLPPSDP*

Protein Length: 326

Fln nts: AATTGTGTAATAATGAAGACCGGCTAGAGGAAAAACATGATCAGGAATTACAACGTGAATTACAACATGAATCTGCAGTGAATATCGCAGTGAATGTATCCAATTTTTCCAATGTACTTTTGTTGGCTTTTAAGATCTATGCAACAGTTAAGAGTGGATCCATAGCTATTGCAGCATCAACACTGGACTCCTTGTTAGATCTGATGGCAGGAGGGATTCTCTGGTTCACTCACCTGTCAATGAAGAATATAAACATCTACAAGTATCCAATTGGGAAACTACGGGTACAGCCTGTTGGCATTATTGTATTTGCTGCCATAATGGCAACTCTAGGATTCCAGGTGCTGATTGAAGCTGTTAGGCAGTTGATTGAAGATAAAGGTTCTACCAAGATGTCAAACTCACAGTTAGAGTGGCTATATGGCATTATGTTGTTCGCAACTGGAGTAAAATTAGCTCTTTGGTTGTACTGTAGAACCTCTAGAAGTGAGATAGTCCGAGCTTATGCAAAGGATCACTATTTTGATGTTGTCACCAATGTAGTTGGTTTAGCTGCAGCTGTTCTTxxxxxxAAATTCTTCTGGTGGATTGACCCGGCTGGAGCAATTGCTCTGGCTCTTTATACTATAATTAATTGGTCTACAACTGTTTTTGAAAATGCAGCATCCCTGGTTGGACAAACAGCACCTCCTGAAATGTTACAAAAATTGACTTACTTGGTTATAAAGCATGATCCTTTAATTCAGCGCGTAGATACAGTCCGGGCGTACACTTTTGGTGTGTTATACTTTGTAGAGGTTGATATAGAGTTACCAGAGGATTTGCCTTTGAAAGTCGCTCACACAATAGGGGAGACGTTGCAAATTAAGATTGAGAATCTTCCGGAAGTTGAGCGTGCATTTGTTCATCTTGATTTCGAGTGTGATCATAAGCCAGAACACTCTGTACTGACCAAACTACCACCCAGTGACCCTTGAATACATTATTGAGTTGAGTATTGCTTTCATGTCCTCTGGCACAGAAGTGATATTCTTTTGCAGGCCAAACGTATCCTATGAGCAGGCAACGGCTTTATGTTATATGCGCATATAATGGATTACTGCCTTTATTAAAGAGATTATCTACATACATT

Fln Alignment:

Contig506___QRELQHESAVNIAVNVSNFSNVLLLAFKIYATVKSGSIAIAASTLDSLLDLMAGGILWFTHLSMKNINIYKYPIGKLRVQPVGIIVFAAIMATLGFQVLIEAVRQLIEDKGSTKMSNSQLEWLYGIMLFATGVKLALWLYCRTSRSEIVRAYAKDHYFDVVTNVVGLAAAVLGDKFFWWIDPAGAIALALYTIINWSTTVFENAASLVGQTAPPEMLQKLTYLVIKHDPLIQRVDTVRAYTFGVLYFVEVDIELPEDLPLKVAHTIGETLQIKIENLPEVERAFVHLDFECDHKPEHSVLTKLPPSDP
B8LK92________________EKELQYESAVTFAVNISNFSNVLLLAFKIYATVKSGSIAIAASTLDSLLDLMAGGILWFTHLSMKKVNIYNYPIGKLRVQPVGIIIFAAIMATLGFQVLIVAVRELIEDTGSTKMSRSQLEWLYGIMLSATGVKLALWLYCRTSRSEIVRAYAKDHYFDVVTNVVGLATAVLGDKFFWWIDPAGAILLALYTVINWSTTVFENAASLVGKTAPPEMLQKLTYLVLKHDPLIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKDAHAIGETLQIKIESLPEVERAFVHLDFECDHKPEHNVLTKLPPSDP

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
345	14		85		0.993533
346	14	85			0.993533
357		14		85	0.993533
358	14		85		0.993533
459	14			85	0.993533
461	14			85	0.993533
474	14			85	0.993533
476			85	14	0.993533
477	85		14		0.993533
478	85			14	0.993533
533	14			85	0.993533
536		85		14	0.993533
537		85		14	0.993533
559	14		85		0.993533
562	14		85		0.993533
571	25	25		25	0.997389
600	20			20	0.99255
601	20	80			0.995493
604			80	20	0.995493
605	80			20	0.995493
655	25			75	0.996473
656	25			75	0.996473
660	75			25	0.996473
786		50	50		1.0
855	50		50		1.0
962	66		33		0.997452
969		66		33	0.997452
970		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain