SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene487

Length: 248 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene487
TGTTAATGAAGATGAGGGAGATTGCAGAGTCTGTGAGGAATTGCTTGGTCCACCAGCTGGAATGATAAGATCTACGCCATCAGATTCCATTGCAACATCATGGGACCCACACATTCTGGGAATGAAAAAGCATGACCTTCTTAGAGAAGACGTTCTTCCAGCATTGGCATCAAACAGGAAGGTTCAACGGCTGCTTAATGAGTTTCTTGATTTACTTTCTGAATATAAAACCAGAGAACCAAAACATT

Ace file of the UniGene biog3_v1.0_unigene487 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9892	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Protein HIRA; AltName: Full=Histone regulator protein emb\|CAB88535.1\| WD repeat domain protein [Arabidopsis thaliana]	-	-	54%
FL-Next	sp=Protein HIRA; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	protein hira	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	76%
Blast2go	negative regulation of gene expression, epigenetic	GO:0045814	Biological Process	76%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	TUP1-like enhancer of split	IPR011494	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LXN4

Fln msg: Distance to subject end: 76 aas, your sequence is shorter than subject: 82 - 1051

Fln protein: VNEDEGDCRVCEELLGPPAGMIRSTPSDSIATSWDPHILGMKKHDLLREDVLPALASNRKVQRLLNEFLDLLSEYKTREPKH

Protein Length: 83

Fln nts: TGTTAATGAAGATGAGGGAGATTGCAGAGTCTGTGAGGAATTGCTTGGTCCACCAGCTGGAATGATAAGATCTACGCCATCAGATTCCATTGCAACATCATGGGACCCACACATTCTGGGAATGAAAAAGCATGACCTTCTTAGAGAAGACGTTCTTCCAGCATTGGCATCAAACAGGAAGGTTCAACGGCTGCTTAATGAGTTTCTTGATTTACTTTCTGAATATAAAACCAGAGAACCAAAACATT

Fln Alignment:

Contig487___DEGDCR-VCEELLGPPAGMIRSTPSDSIATSWDPHILGMKKHDLLREDVLPALASNRKVQRLLNEFLDLLSEYKTRE
Q9LXN4________________DESRLREVCESFLGPPTGMAEAASSDT-NLSWDPYVLGVKKHKLLRNDILPAMASNRKVQRLLNEFIDLLSEYEDVE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
61	25		75		0.996473
62	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain