SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene400

Length: 1186 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene400

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4876	53/54
SustainPine v2.0	sp_v2.0_unigene26103	1/54

Source	Descriptions	Term	Type	Identity
AutoFact	nucleic acid binding protein1 [Zea mays] gb\|AAA33486.1\| nucleic acid-binding protein [Zea mays] gb\|ACG38158.1\| ribonucleoprotein [Zea mays] gb\|ACL52389.1\| unknown [Zea mays]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	31 kda chloroplastic-like	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	75%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVB2

Fln msg: atg_distance in limit (1-15): atg_distance = 6, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 219 - 290

Fln protein: MANASEWEQDVGVKTQEGEEGETVAGEIDFENEFVELPEGTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMATVEEAEKGVELFNRYSLEGRLLTVNKAAPRGTKFERPAQPASGSKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVTDAIAALDGTELDGRPLRVNIAEDRSRRGF*

Protein Length: 220

Fln nts: AATGTGATCCTCAATATCCTCAATATTGGATGAAGCTGCTGAACCTCCCATCATAAACCCCTCCAACCCCAGCAAAGGCCGAGCACAGACCGTCAGTGCTGAGAGCCCGAAAGCCTTTATTGGATACCAAAATCCCCGTAAAAAATAATGGCATCCTCTGTTACGGTCTCCAACTCCCTGTCTCGTCAAGAGGGCGCCCGTC_-_ATGGCAAACGCCTCGGAGTGGGAGCAAGATGTAGGGGTCAAGACACAAGAAGGAGAAGAAGGGGAAACTGTGGCAGGTGAAATCGATTTTGAGAATGAATTTGTGGAGCTTCCAGAGGGGACGAAGCTGTTTGTGGGGAATTTGCCCTTCAACTTAGACAACCAGCAACTTGGCGAGCTCTTTGAAGGCGCTGGAGAAGTCTTGGATGTCAATATCATTACGGACAGAGAAACTGGAAACTCTCGTGGCTTTGGTTTTGTGACCATGGCCACTGTTGAAGAGGCAGAGAAAGGGGTTGAGCTTTTCAATAGATATAGCTTAGAGGGCAGACTCTTGACAGTCAATAAGGCTGCTCCTCGAGGAACCAAATTTGAAAGGCCAGCTCAACCTGCCTCTGGCAGCAAAATTTATGTTGGGAATTTGCCATGGCAGGCTGATGATAATAGCTTGTTGCAATTATTCAGCGAACATGGAAAGGTTTTGGAAGCAAGAGTTGTATATGATAGAGAAACTGGGCGGTCACGAGGCTTTGGATTTGTTACATACTCATCAGAAAGTGAAGTTACTGATGCCATTGCTGCCCTCGATGGAACTGAACTGGATGGGAGGCCCTTGAGAGTGAACATTGCTGAGGACAGATCTAGACGAGGATTTTGAGGTAGAATAGTGGGCTTTCAGTTGTTTCTCGTGCTTCTGCAGTGCCTTCCACCTTTGTACAGTGGACTGCTAGCTGCTTTTTTCCATTTTAAAACCTCCATATGTCTTGCAGATCTTGTACTCTTATTGTGCAGAGGTGTTGCTTTTTGGTTTTTCCGCACGGTTCTATTTATTACACAATATATTCAGATTTGTTAATGATAATATGAGCCATGATAATATGAGCCAAGGCAATTCTTAGTTTTTGTAGCTGTATTAAAGTGTTGTAATGACACGTGCATGCAAGGAAAATGGAGAAAGCTTGTTCTTTCTTGGAAATACTTACCT

Fln Alignment:

Contig400___VKRAPVMANASEWEQDVGVKTQ-EGEEGETVAGEIDFENEFVELPEGTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMATVEEAEKGVELFNRYSLEGRLLTVNKAAPRGTKFERPAQPASG-SKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVTDAIAALDGTELDGRPLRVNIAEDRSRRGF
A9NVB2________________VKRAPVMANASEWEQDVGVKTQEEGEEG-AGDGEIDFENEFVELPEGTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVELFNRHSLEGRLLTVNKAAPRGTKVERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIAEDR-RRGF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
181	25			75	0.996473
561	25		75		0.996473
582	20	80			0.995493
584			80	20	0.995493
585		80	20		0.995493
678	87			12	0.992554
1072	33	66			0.997452
1077	33			66	0.997452
1078	33			33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain