SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene360

Length: 521 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene360
AATGTCAAAGGCCAACGATTGGAAATCCAAGGGTACCCCTCAATTGCAGCGCTGGTCGAGGGTTCGGAATATCCGCTCTGGTAGGCGGTTGGACCGCCCAGTCCAAGACAAGGTAGAAACGTCATCTTCAATGTCCACTACTACAACCACTAATAATAATTTCACCAGTAATGGCGTGCTCTCTATTCCTAATAGAATTGATGACTATGAAGGGAGCGACGACGAAGACGAAAGATACTCGCCCTCTGGAAAGGCGATTTACATGGTCTCTGATGGCACTGGATGGACAGCAGAGCACTCTGTCCATGCTGCATTGGGTCAATTTGAGACCTGTTTAGTCGACAAAGGCTGTGCTGTAAATACCCATTTATTCTCGGGGATTGATGAGGTTGATCGTCTTATGGAGATCATCAGACAAGCAGCGGAGGAGCGAGCGCTTCTACTATACACATTGGCAGATCCGAACATGGCAGGGGCGGCAAAGAATGCTTGCCAGTTGTGGGGAGTGCCTTATACACATT

Ace file of the UniGene biog3_v1.0_unigene360 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14470	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF299 domain containing protein	-	-	5.0e-29	35%
FL-Next	Isoform 2 of Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PDRP1	-	-	0.0	53%
Blast2go	pyruvate orthophosphate dikinase regulatory protein	-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	69%
Blast2go	transferase activity, transferring phosphorus-containing groups	GO:0016772	Molecular Function	69%
Blast2go	plastid	GO:0009536	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bifunctional kinase-pyrophosphorylase	IPR005177	-	0.0	-
Sma3	Pyruvate Pi dikinase regulator	IPR017409	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GVP6-2

Fln msg: Distance to subject end: 199 aas, your sequence is shorter than subject: 173 - 444

Fln protein: MSKANDWKSKGTPQLQRWSRVRNIRSGRRLDRPVQDKVETSSSMSTTTTTNNNFTSNGVLSIPNRIDDYEGSDDEDERYSPSGKAIYMVSDGTGWTAEHSVHAALGQFETCLVDKGCAVNTHLFSGIDEVDRLMEIIRQAAEERALLLYTLADPNMAGAAKNACQLWGVPYTH

Protein Length: 174

Fln nts: AATGTCAAAGGCCAACGATTGGAAATCCAAGGGTACCCCTCAATTGCAGCGCTGGTCGAGGGTTCGGAATATCCGCTCTGGTAGGCGGTTGGACCGCCCAGTCCAAGACAAGGTAGAAACGTCATCTTCAATGTCCACTACTACAACCACTAATAATAATTTCACCAGTAATGGCGTGCTCTCTATTCCTAATAGAATTGATGACTATGAAGGGAGCGACGACGAAGACGAAAGATACTCGCCCTCTGGAAAGGCGATTTACATGGTCTCTGATGGCACTGGATGGACAGCAGAGCACTCTGTCCATGCTGCATTGGGTCAATTTGAGACCTGTTTAGTCGACAAAGGCTGTGCTGTAAATACCCATTTATTCTCGGGGATTGATGAGGTTGATCGTCTTATGGAGATCATCAGACAAGCAGCGGAGGAGCGAGCGCTTCTACTATACACATTGGCAGATCCGAACATGGCAGGGGCGGCAAAGAATGCTTGCCAGTTGTGGGGAGTGCCTTATACACATT

Fln Alignment:

Contig360___GTPQLQRWSRVRNIRSGRRLDRP-VQDKVEXXXXXXXXXXXXXXXXXNGVLSIPNRIDDYEGSDD-----------EDERYSPSG-----KAIYMVSDGTGWTAEHSVHAALGQFETCLVDKGCAVNTHLFSGIDEVDRLMEIIRQAAEERALLLYTLADPNMAGAAKNACQLWGVP
Q8GVP6-2______________GSSQLHRWSRARAHRSGRRLEWPTIRDR-----------------GSGGASSPPTPTRPHPSSDEAASAAAKVAVEEEDGYGVVGRDEAAKSIYMVSDGTGWTAEHSVNAALGQFEHCLVDRGCAVNTHLFNGIDDMDRLIEIVKQAAKEGALVLYTLADPSMAEATKKACELWGVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain