SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene314

Length: 347 nt

UniGene Fasta

>biog3_v1.0_unigene314
AATGTATTTACCGGGCCCATACCATCATTTTTTTCTACGTTTCCCAATCTAGTTATTTTGAATCTGGCCTTCAACAGGTTTAGTGGCCCTATTCCTAGCTCTCTGAGCAATTTGAAGAAATTGGCTACTCTGTATCTTGATAATAATTCTTTAAATGGGTCCATTTCTGCATTAAATCCCCCCAATCTGCAGCAATTGAATGTATCAAACAATCAACTCAATGGATCTGTGCCTCGCACACTGCAAAAGTTCCCCGCGAGTTCATTTCTCGGGAACTCTTTGTGTGGGTTTCCTTTGCTATCTTGTGAAGGCGTTGCCCCATCACCAAGTCCTTCAAGTGGGCACAA

Ace file of the UniGene biog3_v1.0_unigene314

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21837	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5A8_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	probable inactive receptor kinase at5g58300-like	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	67%
Blast2go	catalytic activity	GO:0003824	Molecular Function	67%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS28

Fln msg: Distance to subject end: 264 aas, your sequence is shorter than subject: 115 - 610

Fln protein: NVFTGPIPSFFSTFPNLVILNLAFNRFSGPIPSSLSNLKKLATLYLDNNSLNGSISALNPPNLQQLNVSNNQLNGSVPRTLQKFPASSFLGNSLCGFPLLSCEGVAPSPSPSSGH

Protein Length: 116

Fln nts: AATGTATTTACCGGGCCCATACCATCATTTTTTTCTACGTTTCCCAATCTAGTTATTTTGAATCTGGCCTTCAACAGGTTTAGTGGCCCTATTCCTAGCTCTCTGAGCAATTTGAAGAAATTGGCTACTCTGTATCTTGATAATAATTCTTTAAATGGGTCCATTTCTGCATTAAATCCCCCCAATCTGCAGCAATTGAATGTATCAAACAATCAACTCAATGGATCTGTGCCTCGCACACTGCAAAAGTTCCCCGCGAGTTCATTTCTCGGGAACTCTTTGTGTGGGTTTCCTTTGCTATCTTGTGAAGGCGTTGCCCCATCACCAAGTCCTTCAAGTGGGCACAA

Fln Alignment:

Contig314___NVFTGPIPSFFSTFPNLVILNLAFNRFSGPIPSSLSNLKKLATLYLDNNSLNGSI
B8LS28________________NILSGPIPAFLGSFVNLTYLDLSGNEFTGPIPASIADLSSIQDLSLSRNRLTGEI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
219	16	83			0.994512
220			16	83	0.994512
221		83	16		0.994512
223	83			16	0.994512
226	16		83		0.994512
228	16			83	0.994512
230	16			83	0.994512
231			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain