SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene311

Length: 225 nt

UniGene Fasta

>biog3_v1.0_unigene311
CAAAGATATAATTGCATGTGGTTTTGATATTTCAAGAACATTCATATTTTCTGATTTTGACTATGTTGGGGGAGCCTTCTACAAGAACATGGTTAGAATTGCCAAATGCGTTACCTTGAATCAGGTAAAAGGAATATTTGGCTTCACTGGGGAGGACCACATTGGAAAAGTCAGTTTTCCTCCCGTACAGGCAGCTCCATCTTTTCCATCTTCATTCCCTCATTT

Ace file of the UniGene biog3_v1.0_unigene311

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23478	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	tryptophanyl-tRNA synthetase [Arabidopsis thaliana] ref\|NP_001078104.1\| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gb\|AAF04890.1\|AC011437_5 putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gb\|AAL85027.1\| putative tryptophanyl-tRNA syn	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	tryptophanyl-trna synthetase	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ic	IPR002305	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Tryptophanyl-tRNA synthetase	IPR002306	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLD4

Fln msg: Distance to subject end: 175 aas, your sequence is shorter than subject: 74 - 399

Fln protein: KDIIACGFDISRTFIFSDFDYVGGAFYKNMVRIAKCVTLNQVKGIFGFTGEDHIGKVSFPPVQAAPSFPSSFPH

Protein Length: 75

Fln nts: CAAAGATATAATTGCATGTGGTTTTGATATTTCAAGAACATTCATATTTTCTGATTTTGACTATGTTGGGGGAGCCTTCTACAAGAACATGGTTAGAATTGCCAAATGCGTTACCTTGAATCAGGTAAAAGGAATATTTGGCTTCACTGGGGAGGACCACATTGGAAAAGTCAGTTTTCCTCCCGTACAGGCAGCTCCATCTTTTCCATCTTCATTCCCTCATTT

Fln Alignment:

Contig311___KDIIACGFDISRTFIFSDFDYVGGAFYKNMVRIAKCVTLNQVKGIFGFTGEDHIGKVSFPPVQAAPSFPSSFPH
B8LLD4________________KDIIACGFDISRTFIFSDFDYVGGAFYKNMVRIAKCVTLNQVRAIFGFTGEDHIGKVSFPPVQAAPSFPSSFPH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain