SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene295

Length: 264 nt

UniGene Fasta

>biog3_v1.0_unigene295
AATGTACTTGGAGCTGTGGGATTGTGTGGTACACATGGAATGCATCCATTGCAATTTGGTACTCACGCTCTTATGTCTCAGATGAGTGTCAATGGTGTTGTAGATCCCACTGTTTCTTCTCCAAGCTTGGGAGCAATGTCTCCACAGCAAAGATGCCTCGTCTTTCCTAACAATGGGTCACCAATGTCCATACATGGATCCTTAGAGAATGCTAATGAACGTGGAAGGAGCCGTAGAATTGACAACAATGCCAATACAAACATT

Ace file of the UniGene biog3_v1.0_unigene295

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4746	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	MEI2-like protein 4 [Arabidopsis thaliana] sp\|Q9LYN7.1\|AML4_ARATH RecName: Full=Protein MEI2-like 4; Short=AML4; AltName: Full=MEI2-like protein 4 emb\|CAB87285.1\| Mei2-like protein [Arabidopsis thaliana] dbj\|BAE99028.1\| Mei2-like protein [Arabidopsis thal	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	35%
Blast2go	protein mei2-like 4-like	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	meristem development	GO:0048507	Biological Process	0.0	73%
Blast2go	RNA binding	GO:0003723	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA recognition motif 2	IPR007201	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	DNA/RNA non-specific endonuclease, active site	IPR018524	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BN23

Fln msg: Distance to subject end: 182 aas, your sequence is shorter than subject: 88 - 932

Fln protein: NVLGAVGLCGTHGMHPLQFGTHALMSQMSVNGVVDPTVSSPSLGAMSPQQRCLVFPNNGSPMSIHGSLENANERGRSRRIDNNANTNI

Protein Length: 89

Fln nts: AATGTACTTGGAGCTGTGGGATTGTGTGGTACACATGGAATGCATCCATTGCAATTTGGTACTCACGCTCTTATGTCTCAGATGAGTGTCAATGGTGTTGTAGATCCCACTGTTTCTTCTCCAAGCTTGGGAGCAATGTCTCCACAGCAAAGATGCCTCGTCTTTCCTAACAATGGGTCACCAATGTCCATACATGGATCCTTAGAGAATGCTAATGAACGTGGAAGGAGCCGTAGAATTGACAACAATGCCAATACAAACATT

Fln Alignment:

Contig295___HGMHPLQFGTHALMSQMSVNGVVDPTVSSPSLGAMSPQQRCLVFPNNGSPMSIHGSLENANERGRSRRIDNNAN
A5BN23________________NSLHPLEFAPHNIFPSVGGN-CIDLSIPPKNVGLHSHHQRCLMFPGRSQLIPMMSSFDPPNERSRSRRNDNSSN

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
94	33		66		0.997452
95	33		66		0.997452
201		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain