SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene289

Length: 930 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene289 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7056	16/17
SustainPine v2.0	sp_v2.0_unigene65050	1/17

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2C (PP2C) [Fagus sylvatica]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein phosphatase	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	84%
Blast2go	metal ion binding	GO:0046872	Molecular Function	84%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	84%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA04

Fln msg: your sequence is shorter than subject: 298 - 370

Fln protein: MEQQGMSADVIRKAFLATEEGFLSIVTKAWPTNPQLAAVGSCCLVGLVCGGVLYVANLGDSRAVLGKLVKSTGEIAAMQLSMEHNAGIEAVRQELQSLHPDDPHIVVLKHGVWRVKGIIQVSRSIGDAYLKKPEFNREPLYQKFRLSEPLRGPILTAEPSINVYTLQPHDHFIIFASDGLWEHLSNQEAVDIVHSHPHAGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDHSLISKFSSRGPTTSIRGFGIKILFVHCNLVLSKVATLHLTNTVNQLLSE*

Protein Length: 299

Fln nts: AATGGAGCAGCAGGGGATGTCTGCTGATGTGATTCGAAAGGCCTTTTTAGCAACAGAAGAGGGGTTTTTGTCCATTGTTACAAAGGCATGGCCTACAAATCCACAGCTTGCAGCAGTTGGGTCTTGCTGTTTAGTAGGGTTGGTTTGTGGTGGGGTGCTTTATGTTGCCAATCTGGGAGATTCCCGTGCTGTTTTGGGAAAATTGGTCAAGTCTACAGGAGAAATTGCTGCCATGCAGTTGTCAATGGAGCATAATGCAGGTATTGAGGCTGTGAGGCAAGAGCTACAATCTTTGCATCCAGATGACCCACATATTGTAGTTCTAAAGCATGGGGTTTGGCGTGTGAAGGGTATCATTCAGGTTTCGAGATCTATTGGAGATGCATACTTGAAAAAGCCTGAGTTCAACCGAGAACCTTTATATCAAAAGTTCCGTCTTTCTGAACCTCTCCGTGGGCCTATCTTGACTGCTGAACCCTCAATTAATGTCTATACCCTTCAGCCTCATGATCACTTTATCATATTTGCATCAGATGGTCTTTGGGAACACTTGAGCAACCAGGAAGCAGTTGATATCGTTCATAGTCACCCACATGCGGGAAGTGCAAGGAGGCTTGTTAAAGCTGCTCTCCAAGAAGCAGCAAAGAAACGGGAGATGCGCTATTCAGATCTCAAGAAGATTGATCGTGGAGTCAGACGACATTTTCATGATGATATTACTGTCATTGTTGTGTTCTTAGACCATTCTTTAATCAGCAAATTCTCAAGTCGTGGCCCTACAACATCTATAAGAGGTTTTGGTATTAAAATTCTTTTTGTACACTGTAACCTGGTACTCTCAAAAGTGGCCACTCTTCATTTGACAAACACAGTCAATCAGCTATTGTCAGAATGA___GATTATCCACTGATCCCCGCCTTTTATCATACATT

Fln Alignment:

Contig289___MEQQGMSADVIRKAFLATEEGFLSIVTKAWPTNPQLAAVGSXXXXXXXXXXXLYVANLGDSRAVLGKLVKSTGEIAAMQLSMEHNAGIEAVRQELQSLHPDDPHIVVLKHGVWRVKGIIQVSRSIGDAYLKKPEFNREPLYQKFRLSEPLRGPILTAEPSINVYTLQPHDHFIIFASDGLWEHLSNQEAVDIVHSHPHAGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDHSLISKFSSRGPTTSIRGFGI
D5AA04________________LEQRGMSAEVIRNAFLATEEGFLSLVTNAWPTKPQLAAVGSCCLVGLVYEKTLYVANLGDSRVVMGRLIRATGEIAAVQLSAEHNASMEAVRQELRSSHPDDPQIVVLKHDVWRVKGIIQVSRSIGDAYLKRPEFNREPLNPKFRLPEPLRRPVLTAEPSITTYTLQPHDRFLIFASDGLWEHLSNQEAVDIVHNHPHVGSAKRLIKAALHEAARKREMRYSDLKRIDRGVRRHFHDDITVIVVFLDHDLISKGSRRSLSQSVRGGGV

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
129	33	66			0.997452
133	33	66			0.997452
134	33	66			1.0
137		66		33	0.997452
253			25	75	0.996473
392	16		83		0.994512
393	83			16	0.994512
394		83	16		0.994512
395		83		16	0.994512
473	20		80		0.995493
475	20	80			0.995493
476		80		20	0.995493
477	80			20	0.995493
504	25			75	0.996473
515	75			25	0.996473
517			75	25	0.996473
616		83	16		0.994512
617	83			16	0.994512
652	10	90			0.90298
653	10			90	0.90298
656		90		10	0.90298
740	88		11		0.923564
765	11		88		0.923564
768	88			11	0.923564
769		88		11	0.923564
809	85			14	0.993533
810			85	14	0.993533
910			66	33	0.997452
911		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain