SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene284

Length: 489 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene284
TTCGTCCTCTTCTTCATCATCATTCTACGGGGATTTCAAAGCATTTCGCCAAGTCACACGCGAACGATATTACATGAAATGCTTCGATCAACCAAGTCAAATGAATCAAAATCAAGTTGGAAGGTTCTTATCATGGACAAAGTAACAACCAAAGTGATGTCTTATACATGCAAAATGGCTGACATTACTGAGGAGGGCATCTCAGTGGTGGAGGACCTCAACAGGCGGAGGCAACCATTCCCTGCAATGGAGGCTGTCTACTTTATTCGGCCGTCAAAGGAGAATGTGATCACGTTCATGTCTGATATGTCAGGAAATTCTCCGTTATACAAAAAGGCCTATGTTTTCTTCAGTTCGCCTATCCCTAAAGATCTGGTTGGCCATATTAAAAGGGATATAAGTATTCTATCACGAATAGCTGCTTTAAGAGAGATGAACTTGGAGTACTTTTGTATTGATTCACAGGGATTTTCTACAGATCATGACATT

Ace file of the UniGene biog3_v1.0_unigene284 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11137	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	SNARE-interacting protein KEULE n=2 Tax=Arabidopsis RepID=KEULE_ARATH	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	snare-interacting protein keule	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	vesicle docking involved in exocytosis	GO:0006904	Biological Process	85%
Blast2go	protein secretion	GO:0009306	Biological Process	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%
Blast2go	peripheral to membrane of membrane fraction	GO:0000300	Cellular Component	85%
Blast2go	cytosol	GO:0005829	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sec1-like protein	IPR001619	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYG5

Fln msg: Distance to subject end: 469 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 137 - 627

Fln protein: MLRSTKSNESKSSWKVLIMDKVTTKVMSYTCKMADITEEGISVVEDLNRRRQPFPAMEAVYFIRPSKENVITFMSDMSGNSPLYKKAYVFFSSPIPKDLVGHIKRDISILSRIAALREMNLEYFCIDSQGFSTDHDI

Protein Length: 138

Fln nts: TTCGTCCTCTTCTTCATCATCATTCTACGGGGATTTCAAAGCATTTCGCCAAGTCACACGCGAACGATATTACATGAA_-_ATGCTTCGATCAACCAAGTCAAATGAATCAAAATCAAGTTGGAAGGTTCTTATCATGGACAAAGTAACAACCAAAGTGATGTCTTATACATGCAAAATGGCTGACATTACTGAGGAGGGCATCTCAGTGGTGGAGGACCTCAACAGGCGGAGGCAACCATTCCCTGCAATGGAGGCTGTCTACTTTATTCGGCCGTCAAAGGAGAATGTGATCACGTTCATGTCTGATATGTCAGGAAATTCTCCGTTATACAAAAAGGCCTATGTTTTCTTCAGTTCGCCTATCCCTAAAGATCTGGTTGGCCATATTAAAAGGGATATAAGTATTCTATCACGAATAGCTGCTTTAAGAGAGATGAACTTGGAGTACTTTTGTATTGATTCACAGGGATTTTCTACAGATCATGACATT

Fln Alignment:

Contig284___WKVLIMDKVTTKVMSYTCKMADITEEGISVVEDLNRRRQPFPAMEAVYFIRPSKENVITFMSDMSGNSPLYKKAYVFFSSPIPKDLV-----GHIKRDISILSRIAALREMNLEYFCIDSQGFS
A9NYG5________________YKVLILDKFCRDILSPLIHVKDLRKHGITLYFTIDKERQTIPDVPAIYFVQPTSANIERIIVDASRG--VYESFHLNFSSSLPRSLLEELAAGTLKSD--CIHRIGKVYDQYLEFVTLENGMFS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
202	20	80			0.995493
204		80		20	0.995493
205	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain