SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene282

Length: 414 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene282
AATGTTTGAAGACATGGCGGTTCCGGTGGAAGACGCCGTGGCAGCTCTCTCCACATTCTCGTTGGAGGATGATCAACCAGATGTCCAAGGACTATCTATTATGTTATCAACAGGAAGATATGCAACTAAAAGTCCAATAGACTATGAGGATGTCCCAGCTTATTGCCTATCTTTGATGGAGGATACAAAGTCTATCAATCAGCTAAATGGCCTGGTTCAAGAGGGAAAGGAGATGGCCGCTGTCCTTTACACATATCGTAGCTGTGTTAAAGCTCTTCCTCAGCTACCTGATTCGATGAAGCAAAGCCAAGCAGATTTGTACCTTGAAACTTACCAAGTTTTAGATTTAGAAATCAGCCGGCTTCGTGAAATCCAGAGATGGCAAGCATCCGCTGCATCCAAACTGGCAACATT

Ace file of the UniGene biog3_v1.0_unigene282 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10401	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein PIR [Arabidopsis thaliana] gb\|AAS78644.1\| ARP2/3 regulatory protein subunit PIRP [Arabidopsis thaliana] gb\|AAT71307.1\| PIROGI [Arabidopsis thaliana] tpg\|DAA04564.1\| TPA_exp: PIRP [Arabidopsis thaliana] gb\|AED92557.1\| protein PIR [Arabidopsis thali	-	-	68%
FL-Next	sp=Protein PIR; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	protein pir	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	84%
Blast2go	actin nucleation	GO:0045010	Biological Process	84%
Blast2go	SCAR complex	GO:0031209	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Cytoplasmic FMR1-interacting	IPR008081	-	-
Sma3		IPR015706	-	-
Sma3	Cytoplasmic FMR1-interacting, subgroup	IPR016536	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q5S2C3

Fln msg: Distance to subject end: 1148 aas, your sequence is shorter than subject: 137 - 1282

Fln protein: MFEDMAVPVEDAVAALSTFSLEDDQPDVQGLSIMLSTGRYATKSPIDYEDVPAYCLSLMEDTKSINQLNGLVQEGKEMAAVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEISRLREIQRWQASAASKLAT

Protein Length: 138

Fln nts: A_-_ATGTTTGAAGACATGGCGGTTCCGGTGGAAGACGCCGTGGCAGCTCTCTCCACATTCTCGTTGGAGGATGATCAACCAGATGTCCAAGGACTATCTATTATGTTATCAACAGGAAGATATGCAACTAAAAGTCCAATAGACTATGAGGATGTCCCAGCTTATTGCCTATCTTTGATGGAGGATACAAAGTCTATCAATCAGCTAAATGGCCTGGTTCAAGAGGGAAAGGAGATGGCCGCTGTCCTTTACACATATCGTAGCTGTGTTAAAGCTCTTCCTCAGCTACCTGATTCGATGAAGCAAAGCCAAGCAGATTTGTACCTTGAAACTTACCAAGTTTTAGATTTAGAAATCAGCCGGCTTCGTGAAATCCAGAGATGGCAAGCATCCGCTGCATCCAAACTGGCAACATT

Fln Alignment:

Contig282___MAVPVEDAVAALSTFSLEDDQPDVQGLSIMLSTGRYATKSPIDYEDVPAYCLSLMEDTKSINQLNGLVQEGKEMAAVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEISRLREIQRWQASAASKLA
Q5S2C3________________MAVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPIEYSDVAAYRLSLSEDTKALNQLNTLIQEGKEMASILYTYRSCVKALPQLPESMKHSQADLYLETYQVLDLEMSRLREIQRWQSSASAKLA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain