SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene273

Length: 390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene273
AATGTCAAAGCACAATGGCATCTTAGGTTTTGAAGAATTTGCACGAGCTCTTTCCGTGTTTCACCCAAATGCTCCAATAGACGACAAAATAGACTTCTCTTTCCAACTTTATGATCTCAAGCAACAAGGGTTTATTGAGCGACAAGAGGTGAAGCAAATGGTAGTAGCTACACTTGCCGAGTCTGGCATGAACCTTTCAGATGATGTAATTGAAAGTATTATTGACAAGACCTTCGAGGAGGCAGATACCAAACATGATGGAAGGATTGACAAGGAAGAGTGGAGGAGTCTTGTTCTGCGACATCCTTCACTTCTGAAAAACATGACACTCCAGTATCTCAAGGACATCACAACATCTTTTCCGAGCTTTGTCTTCCATTCACAGACATT

Ace file of the UniGene biog3_v1.0_unigene273 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10138	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Calcineurin B-like protein 03 n=12 Tax=Magnoliophyta RepID=A5AHA7_VITVI	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	calcineurin b-like protein 3	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	detection of calcium ion	GO:0005513	Biological Process	94%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3		IPR015757	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Recoverin	IPR001125	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLG4

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 129 - 226

Fln protein: MSKHNGILGFEEFARALSVFHPNAPIDDKIDFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGRIDKEEWRSLVLRHPSLLKNMTLQYLKDITTSFPSFVFHSQT

Protein Length: 130

Fln nts: AATGTCAAAGCACAATGGCATCTTAGGTTTTGAAGAATTTGCACGAGCTCTTTCCGTGTTTCACCCAAATGCTCCAATAGACGACAAAATAGACTTCTCTTTCCAACTTTATGATCTCAAGCAACAAGGGTTTATTGAGCGACAAGAGGTGAAGCAAATGGTAGTAGCTACACTTGCCGAGTCTGGCATGAACCTTTCAGATGATGTAATTGAAAGTATTATTGACAAGACCTTCGAGGAGGCAGATACCAAACATGATGGAAGGATTGACAAGGAAGAGTGGAGGAGTCTTGTTCTGCGACATCCTTCACTTCTGAAAAACATGACACTCCAGTATCTCAAGGACATCACAACATCTTTTCCGAGCTTTGTCTTCCATTCACAGACATT

Fln Alignment:

Contig273___SKHNGILGFEEFARALSVFHPNAPIDDKIDFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGRIDKEEWRSLVLRHPSLLKNMTLQYLKDITTSFPSFVFHSQ
A9NLG4________________TKRNGLLGFEEFACALSVFHPNAPIDDKIEFSFQLYDLKQKGFIGRQEVKQMVVATLAESGMNLSDDVVENIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLPYLKDITTSFPSFVFHSQ

SNPs (tot: 3)

Position	A %	G %	T %	Probability
139	33		66	0.997452
140	33		66	0.997452
141		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain