SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene261

Length: 363 nt

UniGene Fasta

>biog3_v1.0_unigene261
GTAAAAAACTCTTATTTGCAGAAGACCGGGAGAAAACACTTCAACAGATCCAGGATTTCTTAGATACCAAGGTTGCATCAAAAGAACTTGTTGATGAACTGAAGGATATAGGAAAGGCTTTACTTCCCAAAACTGTAGATGTGGCCACTAATAATGGAGCAGTTGTCCCGAGCACCGAGCAGGCCAATGACTCTGTAACACCTGTGCCTGCACCAGTGTCGATTTCTTCTGGCACCGAGATTGGAGACAATTCAACACCTCAGCCTGTACCAGTTAAAAATGAAACAATTGCTTCCAATTTGCTGTCACCTCAACTCCATCACCCCGATATTTGTCACCATACCCCCATTATCCGGATACATT

Ace file of the UniGene biog3_v1.0_unigene261

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18554	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	thylakoid rhodanese-like protein [Arabidopsis thaliana] sp\|Q9M158.2\|Y4105_ARATH RecName: Full=Uncharacterized protein At4g01050, chloroplastic; Flags: Precursor gb\|AAL09804.1\| AT4g01050/F2N1_31 [Arabidopsis thaliana] gb\|AAL15331.1\| AT4g01050/F2N1_31 [Arab	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	at4g01050 f2n1_31	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	64%
Blast2go	photosynthetic electron transport in photosystem II	GO:0009772	Biological Process	64%
Blast2go	protein binding	GO:0005515	Molecular Function	64%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	64%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rhodanese-like	IPR001763	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLQ8

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 120 - 463

Fln protein: KKLLFAEDREKTLQQIQDFLDTKVASKELVDELKDIGKALLPKTVDVATNNGAVVPSTEQANDSVTPVPAPVSISSGTEIGDNSTPQPVPVKNETIASNLLSPQLHHPDICHHTPIIRIH

Protein Length: 121

Fln nts: GTAAAAAACTCTTATTTGCAGAAGACCGGGAGAAAACACTTCAACAGATCCAGGATTTCTTAGATACCAAGGTTGCATCAAAAGAACTTGTTGATGAACTGAAGGATATAGGAAAGGCTTTACTTCCCAAAACTGTAGATGTGGCCACTAATAATGGAGCAGTTGTCCCGAGCACCGAGCAGGCCAATGACTCTGTAACACCTGTGCCTGCACCAGTGTCGATTTCTTCTGGCACCGAGATTGGAGACAATTCAACACCTCAGCCTGTACCAGTTAAAAATGAAACAATTGCTTCCAATTTGCTGTCACCTCAACTCCATCACCCCGATATTTGTCACCATACCCCCATTATCCGGATACATT

Fln Alignment:

Contig261___KKLLFAEDREKTLQQIQDFLDTKVASKELVDELKDIGKALLPKTVDVATNNGAVVPSTEQANDSVTPVPAPVSISSGTEIGDNSTPQPVPVKNETIASNL----------LSPQLHHPD
B8LLQ8________________KRLLFAEDRKRTLQQIQDFLDTKVAPKELVDELKEIGKALLPKTADVATNNGAVVPRTQQANDSVTPDPAPVSVSSGAEIGDNSTPQPVPVKSETIVSNVAVTSTPSPRSLSPYPHYPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain