SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene252

Length: 1060 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene252

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2984	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=C0PT44_PICSI	-	-	69%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	pectin methylesterase	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	70%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	70%
Blast2go	Starch and sucrose metabolism	00500	70%
Blast2go	Metabolic pathways	01100	70%

Source	GOs	Term	Type	Identity
Blast2go	cell wall modification	GO:0042545	Biological Process	70%
Blast2go	negative regulation of catalytic activity	GO:0043086	Biological Process	70%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	70%
Blast2go	aspartyl esterase activity	GO:0045330	Molecular Function	70%
Blast2go	enzyme inhibitor activity	GO:0004857	Molecular Function	70%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	70%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Peptide chain release factor class I/class II	IPR000352	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Peptide chain release factor 1	IPR004373	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Peptide chain release factor	IPR005139	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Carbohydrate-binding/sugar hydrolysis domain	IPR006633	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT44

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 352 - 601

Fln protein: CSFPGLSKRPNPMEIVKAVVHLSINAVKKANAKAHGLCRPGLDQRQRGALKDCFELFHDTLDELHGTLSDLENATFMSIPQHANDLETLLSAAITNQYTCLDSFSHSKGNLKQRLLGGLRNVSHLVSNSLAMVKNISAEASSLANQRRTFPTQNRRLLSDQSDPNFMPMDSDGFPTWMSAGDRRLLQTSTSTVKPNAVVAKDGSGNYTNITEAVEKAPEKSQTRYVIHIKAGVYAENVELHKKKTNIMFIGDGMDVTVVTGNRNVKDNFTTFRSATVAVTGNGFIARDMTFENTAGPAKHQAVALRVGSDLSAFYRCSFKGYQDTLYAHSLRQFYRECNIYGTVDFIFGNSA

Protein Length: 353

Fln nts: AATGTAGCTTTCCTGGATTATCTAAACGGCCAAACCCCATGGAGATTGTGAAGGCCGTCGTGCATCTGAGTATAAATGCGGTAAAGAAGGCAAATGCCAAAGCCCACGGGCTATGTCGCCCCGGTCTCGACCAGAGACAACGCGGTGCGCTGAAAGATTGTTTCGAGTTATTCCATGACACGCTCGATGAATTGCACGGCACGCTCTCCGATTTGGAGAACGCGACTTTCATGTCAATTCCACAGCACGCCAATGACCTCGAGACATTGCTGAGCGCGGCCATCACGAATCAGTACACCTGCCTTGATAGTTTTTCTCACAGCAAGGGGAATCTCAAGCAACGTTTGCTGGGAGGGCTGCGCAATGTGTCTCATCTGGTCAGCAATTCGCTGGCTATGGTCAAGAATATTTCAGCCGAAGCTTCAAGCCTGGCCAATCAGCGGCGAACTTTTCCGACACAGAATCGCCGTCTGTTGTCGGATCAATCTGATCCCAATTTCATGCCCATGGATTCCGATGGTTTTCCGACCTGGATGTCAGCCGGAGATCGAAGGCTTCTGCAAACCTCTACGAGCACGGTGAAGCCGAACGCTGTGGTTGCGAAGGACGGCAGTGGAAATTACACGAACATTACAGAAGCAGTGGAGAAGGCTCCCGAGAAGAGCCAGACGAGATACGTAATTCATATAAAAGCAGGAGTTTATGCAGAGAATGTGGAGTTGCACAAGAAGAAAACTAATATCATGTTCATTGGAGATGGTATGGATGTCACAGTGGTGACCGGAAACCGAAATGTGAAGGACAATTTCACAACCTTTCGTTCTGCAACTGTTGCTGTGACTGGAAACGGATTCATCGCTCGCGACATGACCTTCGAGAACACGGCAGGACCCGCAAAACACCAGGCGGTGGCCCTGCGTGTGGGATCAGATCTCTCGGCTTTCTATCGATGCAGTTTCAAGGGTTACCAGGACACCCTATACGCCCATTCCCTTCGTCAGTTTTACAGAGAATGCAACATCTATGGCACCGTAGATTTCATCTTCGGCAACTCCGCCGT

Fln Alignment:

Contig252___SFPGLSKRPNPMEIVKAVVHLSINAVKKANAKAHGL-CRPGLDQRQRGALKDCFELFHDTLDELHGTLSDLENATFMSIPQHANDLETLLSAAITNQYTCLDSFSHSKGNLKQRLLGGLRNVSHLVSNSLAMVKNISAEASSLANQRRTFPTQNRRLLSDQSDPNFMPMDSDGFPTWMSAGDRRLLQTSTSTVKPNAVVAKDGSGNYTNITEAVEKAPEKSQTRYVIHIKAGVYAENVELHKKKTNIMFIGDGMDVTVVTGNRNVKDNFTTFRSATVAVTGNGFIARDMTFENTAGPAKHQAVALRVGSDLSAFYRCSFKGYQDTLYAHSLRQFYRECNIYGTVDFIFGNSA
C0PT44________________SFPGLSDRAGPIEIVHVVLSVSIAAVEKANALARIMWTRPGLSHRKRGALQDCLELFDETLDELYETVSNLKNGSCMSAPEKVNDLETLLSAAITNQYTCLDSSARS--NLRQELQGGLMSISHLVSNSLAIVKNIATRASNVTVNS----IHNRRLLSDDQGSEFMAMESDGFPSWMSAKERSLLQSSRDNIMPNAVVAKDGSGHHTSIGDAVNAAPQKSRTRYVIHIKAGIYWENVEVNKKKTHLMFIGDGIGATVVAGNRNVKDGYTTYRSATVAVNGNGFIARDITFENTAGAAKHQAVALRVGSDFSAFYRCSFQGYQDTLYVHSLRQFYRECNVYGTVDFIFGNAA

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
181	33	66			0.997452
182			66	33	0.997452
183		66	33		0.997452
442	20		80		0.995493
443		80		20	0.995493
445			80	20	0.995493
502	16	83			0.994512
508		83		16	0.994512
509	66		33		1.0
677	25			75	0.996473
679		75		25	0.996473
721	16		83		0.994512
722	16			83	0.994512
726	83			16	0.994512
904	25	75			0.996473
907			75	25	0.996473
908			75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain