SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene200

Length: 393 nt

UniGene Fasta

>biog3_v1.0_unigene200
CAAGGAACAGTGATGCACTTGCAGCAATGCAGAGGTACAATGGTGTCCAGCTCGATGGCAAGCCAATGAAGATTGAGGTTGTTGGTACAAACTTGGCTTTGCCTGTTTTGACTGGAACATCTGCTGGAAGAGGACGGGGAGCTTCCATGACAGGTGGATACGCAGGGGCTACTTCCTCAAGAAGAAGAGGTGGTGGCTGGAACTGGGGCCGTGGGCTTGGATTTAGGCGTGGCCGTGGTCGTGGACGGGGACGCGGAAGAGGGCGTGGCCGAAGAAACCAAGTACCTGATAAGTCTATGGAGGAACTCAATAAAGAGTTGGAAGAATATCACGCTGAAGCAATGCAAACTTCTTAAAATTGTAGCCTGTACAGGCAGGATCTTGTAGGAGAGG

Ace file of the UniGene biog3_v1.0_unigene200

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7035	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0724 RNA-binding proteins (RRM domain)	-	-	3.0e-09	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	rna and export factor binding	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEG8

Fln msg: your sequence is shorter than subject: 118 - 274

Fln protein: RNSDALAAMQRYNGVQLDGKPMKIEVVGTNLALPVLTGTSAGRGRGASMTGGYAGATSSRRRGGGWNWGRGLGFRRGRGRGRGRGRGRGRRNQVPDKSMEELNKELEEYHAEAMQTS*

Protein Length: 119

Fln nts: CAAGGAACAGTGATGCACTTGCAGCAATGCAGAGGTACAATGGTGTCCAGCTCGATGGCAAGCCAATGAAGATTGAGGTTGTTGGTACAAACTTGGCTTTGCCTGTTTTGACTGGAACATCTGCTGGAAGAGGACGGGGAGCTTCCATGACAGGTGGATACGCAGGGGCTACTTCCTCAAGAAGAAGAGGTGGTGGCTGGAACTGGGGCCGTGGGCTTGGATTTAGGCGTGGCCGTGGTCGTGGACGGGGACGCGGAAGAGGGCGTGGCCGAAGAAACCAAGTACCTGATAAGTCTATGGAGGAACTCAATAAAGAGTTGGAAGAATATCACGCTGAAGCAATGCAAACTTCTTAA___AATTGTAGCCTGTACAGGCAGGATCTTGTAGGAGAGG

Fln Alignment:

Contig200___DALAAMQRYNGVQLDGKPMKIEVVGTNLALPV-----LTGTSAGRGRGASM--TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQVPDKSMEELNKELEEYHAEAMQTS
D5AEG8________________DAVAAVKRYNNVQLDGKPMKIELVGTGLSLPLSARVNVTGTSAGRGRRTVVMTPGFTRAAADASMEQRGGNGNWNRRRGRRSNGRGRGGRRGRGRSQVPDKSAAELDKELENYHTEAMQTS

SNPs (tot: 4)

Position	A %	G %	T %	Probability
253	33	66		0.997452
255	33	66		0.997452
256		66	33	0.997452
257	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain