SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene194

Length: 915 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene194

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18324	14/19
SustainPine v2.0	sp_v2.0_unigene61476	4/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2AX n=7 Tax=Spermatophyta RepID=H2AX_PICAB	-	-	2.0e-32	70%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	histone h2a	-	-	7.91131e-41	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	7.91131e-41	91%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
158	33		66		0.997452
159	33		66		0.997452
160			66	33	0.997452
162		66		33	0.997452
244	25			75	0.996473
245	75			25	0.996473
246	75		25		0.996473
247		75		25	0.996473
304		20	80		0.995493
305	20	80			0.995493
307		80		20	0.995493
418	22		77		0.999999
419		77		22	0.999999
421		77		22	0.999999
520		55		44	1.0
628		14		85	0.993533
629	14		85		0.993533
687	33		66		0.997452
688	66	33			0.997452
691	66			33	0.997452
739	25		75		0.996473
743			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain