SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene191

Length: 245 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene191
GTGAAATAGAGGGGATTCAACAATGCAGGTCCACATATCACCTAGCATGAGAACTATTACTATATCTACCAGCAATGGGTTCCTGGACTTTATGAAGGTCAAGGTTGCTGCTCGCCATCTTTCATATAGGACCATCTTCTATACAATGTTGATGCTCGCTGTTCTGCTGCCCTTTATCTTCATTCTAATGGCGCTTGTTAAGCTGGAAGGTGTGGATAAATGTTCATCACTAGATTGTCTCAGCA

Ace file of the UniGene biog3_v1.0_unigene191 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11424	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable galacturonosyltransferase 13 n=5 Tax=Arabidopsis RepID=GAUTD_ARATH	-	-	1.99993e-41	58%
FL-Next	sp=Probable galacturonosyltransferase 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	73%
Blast2go	alpha- -galacturonosyltransferase	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	81%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate biosynthetic process	GO:0016051	Biological Process	81%
Blast2go	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	81%
Blast2go	plastid	GO:0009536	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8GWT1

Fln msg: Distance to subject end: 458 aas, your sequence is shorter than subject: 74 - 532

Fln protein: MQVHISPSMRTITISTSNGFLDFMKVKVAARHLSYRTIFYTMLMLAVLLPFIFILMALVKLEGVDKCSSLDCLS

Protein Length: 75

Fln nts: GTGAAATAGAGGGGATTCAACA_-_ATGCAGGTCCACATATCACCTAGCATGAGAACTATTACTATATCTACCAGCAATGGGTTCCTGGACTTTATGAAGGTCAAGGTTGCTGCTCGCCATCTTTCATATAGGACCATCTTCTATACAATGTTGATGCTCGCTGTTCTGCTGCCCTTTATCTTCATTCTAATGGCGCTTGTTAAGCTGGAAGGTGTGGATAAATGTTCATCACTAGATTGTCTCAGCA

Fln Alignment:

Contig191___MQVHISPSMRTITISTSNGFLDFMKVKVAARHLSYRTIFYTMLMLAVLLPFIFILMALVKLEGVDKCSSLDCL
Q8GWT1________________MQLHISPSMRSITISSSNEFIDLMKIKVAARHISYRTLFHTILILAFLLPFVFILTAVVTLEGVNKCSSIDCL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
82	25		75		0.996473
83	75			25	0.996473
84	75		25		0.996473
85		75		25	0.996473
193	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain