SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene190

Length: 553 nt

UniGene Fasta

>biog3_v1.0_unigene190
GAATTCAGCGCAGTGGGTGGGAATGCAGGAACAGTCGCCAGACGAATCATGGAGAAGCTTCCTCTCCAAGATCGCGGAGAAGGAGAAAGTCACCTATGCTATTCTCAGGATCGCCACATCTTCCACATATTAAGAGGATCCAATGGATTAACCTTCCTCTGCATGGCCAACGACACCTTTGGCAGACGAATTCCATTTGCATATTTAGAGGATATTCAAATGAGATTTATGAAGACATACGGCCGTGTGGCTCACAATGCACTTGCTTATGCAATGAATGATGAATTTTCTAGAGTTCTGCATCAGCAGATGGAGTATTTCTCTAGCAACCCCAATGCAGACACCTTAACACGTGTTAGGGGGGAAATGAATGAGGTACGCACAGTTATGGTTGAAAACATAGAAAAAATCCTAGAAAGAGGGGATAGAATTGAACTTCTGGTTGATAAAACATCAACTATTCAGGACAATTCGTTTCATTTCAAGAAGCAGTCCAGGCGACTACGACAAGCACTTTGGATGAAGAATGCAAAGCTTTTGGCTTCATTACATT

Ace file of the UniGene biog3_v1.0_unigene190

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2395	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Putative synaptobrevin-like protein [Oryza sativa Japonica Group]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	vesicle-associated membrane protein 714	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	88%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	88%
Blast2go	integral to membrane	GO:0016021	Cellular Component	88%
Blast2go	vacuole	GO:0005773	Cellular Component	88%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Longin	IPR010908	-	0.0	-
Sma3	Synaptobrevin	IPR001388	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2K7

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 184 - 219

Fln protein: EFSAVGGNAGTVARRIMEKLPLQDRGEGESHLCYSQDRHIFHILRGSNGLTFLCMANDTFGRRIPFAYLEDIQMRFMKTYGRVAHNALAYAMNDEFSRVLHQQMEYFSSNPNADTLTRVRGEMNEVRTVMVENIEKILERGDRIELLVDKTSTIQDNSFHFKKQSRRLRQALWMKNAKLLASLH

Protein Length: 185

Fln nts: GAATTCAGCGCAGTGGGTGGGAATGCAGGAACAGTCGCCAGACGAATCATGGAGAAGCTTCCTCTCCAAGATCGCGGAGAAGGAGAAAGTCACCTATGCTATTCTCAGGATCGCCACATCTTCCACATATTAAGAGGATCCAATGGATTAACCTTCCTCTGCATGGCCAACGACACCTTTGGCAGACGAATTCCATTTGCATATTTAGAGGATATTCAAATGAGATTTATGAAGACATACGGCCGTGTGGCTCACAATGCACTTGCTTATGCAATGAATGATGAATTTTCTAGAGTTCTGCATCAGCAGATGGAGTATTTCTCTAGCAACCCCAATGCAGACACCTTAACACGTGTTAGGGGGGAAATGAATGAGGTACGCACAGTTATGGTTGAAAACATAGAAAAAATCCTAGAAAGAGGGGATAGAATTGAACTTCTGGTTGATAAAACATCAACTATTCAGGACAATTCGTTTCATTTCAAGAAGCAGTCCAGGCGACTACGACAAGCACTTTGGATGAAGAATGCAAAGCTTTTGGCTTCATTACATT

Fln Alignment:

Contig190___EFSAVGGNAGTVARRIMEKLPLQDRGEGESHLCYSQDRHIFHILRGSNGLTFLCMANDTFGRRIPFAYLEDIQMRFMKTYGRVAHNALAYAMNDEFSRVLHQQMEYFSSNPNA-DTLTRVRGEMNEVRTVMVENIEKILERGDRIELLVDKTSTIQDNSFHFKKQSRRLRQALWMKNAK
A9P2K7________________EHTSFSGNFSIIAVQCLQKLP-----SNSNKFTYTCDNHTFNYLV-DDGFVFLVVSDEAAGRQVPFLFLERVKEDFKRRYGGRAETSMAHSLDKDYGPILRDHMQYCMDHPEELSKFSKIKAQVSEVKGIMMDNIEKVLDRGEKIELLVDKTEGLQFQADNFQRQGRQLRRKMWLQNLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain