SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene185

Length: 1161 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene185

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9989	3/15
SustainPine v2.0	sp_v2.0_unigene28599	12/15

Source	Descriptions	Term	Type	e value	Identity
AutoFact	thylakoid lumenal protein [Arabidopsis thaliana] sp\|Q9SW33.1\|TL1Y_ARATH RecName: Full=Thylakoid lumenal 17.9 kDa protein, chloroplastic; Flags: Precursor emb\|CAB36735.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB79402.1\| hypothetical protein [Ara	-	-	2.99878e-43	56%
FL-Next	sp=Thylakoid lumenal 17.9 kDa protein, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Blast2go	protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	MULE transposase domain	IPR018289	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SW33

Fln msg: Overlapping hits, possible frame ERROR between 331 and 322, your sequence is shorter than subject: 204 - 225

Fln protein: NKARPVTKQVSYVCCRWRLTEGIKHGGTLVSVAIGISLATPLSALSVPSISPTPFSESQDGLQLGLENGIIRPCPPTNPTCISTTSRSASFALPWRIPQDYSDNVIxxxxxAILKTQKNAKIVTVEDTPSGQYMQAEVDGSFGRDVMEFLVKKDTVTYRSLARKVIYVYPFTTAFGNPKSQEERLDRIVNELGWYVPSFDSMY*

Protein Length: 205

Fln nts: AAACAAAGCTCGACCAGTAACAAAGCAGGTAAGTTATGTATGTTGCCGTTGGAGGCTAACAGAAGGCATAAAACACGGTGGAACATTGGTTTCTGTGGCAATTGGCATTAGTTTAGCCACACCTCTGTCTGCATTGTCAGTGCCTTCCATCTCACCCACACCATTTTCTGAATCACAGGACGGCCTCCAGCTCGGACTAGAAAATGGGATAATACGGCCATGCCCTCCAACTAATCCAACATGCATTTCGACCACATCGAGATCTGCTTCATTCGCACTACCATGGAGAATTCCTCAGGATTATTCTGACAATGTTATTxxxxxxxxxxxxxxxGCCATCTTGAAAACCCAGAAAAACGCAAAGATTGTTACAGTGGAAGACACTCCAAGTGGTCAATATATGCAAGCAGAAGTGGATGGATCATTCGGTCGGGATGTAATGGAATTCTTGGTGAAAAAAGATACAGTGACATATAGATCTCTGGCCAGAAAAGTTATTTATGTATATCCATTTACAACTGCGTTTGGAAACCCTAAAAGTCAGGAAGAGAGATTGGACAGAATAGTCAATGAATTAGGGTGGTATGTCCCCAGTTTTGACTCAATGTATTGATTCCTTTTCACCTTTTTTACTGTTCTTTGTTCTCTACAGACCATGGGATTAGTTCCTTTGGTAATGTTGCCATTGAGGAAATCAAGTTATTTACCAAACTAATTGAACTGGTCATCATGCTTGGGTAAAGTCACGGTTATTGCTTTTCATTGAAATACTCTGTATGTGCTCAAGAGTTTAGGTGTGTAGAGAAGGGAATTCCCTTGTATGAAAGCCATTTATATTGGCTACACAAAAAGAGAATCTATCTTAGCTTATCAAGTTATGCCCTGCAACAATAGTTCCTTTATAATATTTGTTAAAATTTGTCAACATGACTAAAGGTTTGCCGACAGGTAGCCATCAGACAGAAAATCTGAATTGCTACTTTCAAGCTAGACTGGAAAACTTCTCTACCTTACTGGTCTCTTTCTGCTTGCTTCTAACCAACTTTCTTGGGACTAGCTAATCTATGGGACATACAGTTTGAAATTGTACAAAACTACAAAGAGATCATGCTTGATATGTCAGTTCCTTAATGAGTACATGATTTGATTATTCTTTTACATT

Fln Alignment:

Contig185___LVSVAIGISLATPLSALSVPSISP-----TPFSESQDGLQLGLENGIIRPCPPTNPTCISTTSRSASFALPWRIPQDYSDNVIKxxxDAILKTQKNAKIVTVEDTPSGQYMQAEVDGS-FGRDVMEFLVKKDTVTYRSLARKVIYVYPFTTAFGNPKSQEERLDRIVNELGWYVPSFDSM
Q9SW33________________LISFALAISLTSFSPALAIPSLSSSQPLTTPFTQSKF-VQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIExxxEAIMSTQKNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAPTFESM

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
280		75		25	0.996473
312	20	80			0.995493
313	80			20	0.995493
314	80		20		0.995493
406	16	16			0.988813
407		83		16	0.994512
503	20			80	0.995493
829	75			25	0.996473
919	80		20		0.995493
946	40		20	40	1.0
947		80		20	0.995493
948		25	50		1.0
951		60		40	1.0
952	60			40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain