SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene162

Length: 178 nt

UniGene Fasta

>biog3_v1.0_unigene162
CTTGCTACATATCCTTCCCATTATAAAGGAACAACTAACACCACAAGAGATTCGCAATGCAAAGGAGCAGCCAAGACCACAAGTGGTAGGAAGAAGAAGAAGACTATGTATAGAGGTATAAGACAACGCACATGGGGCAAATGGGCTGCAGAAATCAGAGATCCCAAAAAAGGAATGA

Ace file of the UniGene biog3_v1.0_unigene162

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3242	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene transcription factor n=2 Tax=Fagus sylvatica RepID=Q70AB2_FAGSY	-	-	6.0e-19	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	ap2 domain containing protein	-	-	2.25605e-23	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to other organism	GO:0051707	Biological Process	2.25605e-23	73%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	2.25605e-23	73%
Blast2go	cell death	GO:0008219	Biological Process	2.25605e-23	73%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	2.25605e-23	73%
Blast2go	response to anoxia	GO:0034059	Biological Process	2.25605e-23	73%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	2.25605e-23	73%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	2.25605e-23	73%
Blast2go	DNA binding	GO:0003677	Molecular Function	2.25605e-23	73%
Blast2go	protein binding	GO:0005515	Molecular Function	2.25605e-23	73%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	2.25605e-23	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.25605e-23	73%
Blast2go	nucleus	GO:0005634	Cellular Component	2.25605e-23	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.25605e-23	73%

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific, Y domain	IPR001711	-	-
Sma3		IPR004348	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWS1

Fln msg: Distance to subject end: 313 aas, your sequence is shorter than subject: 59 - 419

Fln protein: LATYPSHYKGTTNTTRDSQCKGAAKTTSGRKKKKTMYRGIRQRTWGKWAAEIRDPKKGM

Protein Length: 60

Fln nts: CTTGCTACATATCCTTCCCATTATAAAGGAACAACTAACACCACAAGAGATTCGCAATGCAAAGGAGCAGCCAAGACCACAAGTGGTAGGAAGAAGAAGAAGACTATGTATAGAGGTATAAGACAACGCACATGGGGCAAATGGGCTGCAGAAATCAGAGATCCCAAAAAAGGAATGA

Fln Alignment:

Contig162___SGRKKKKTMYRGIRQRTWGKWAAEIRDPKKG
A9NWS1________________SAGRKRKNLYRGIRQRPWGKWAAEIRDPRKG

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
42	25	75			0.996473
45		75	25		0.996473
46	75			25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
90	103	GAA GAA GAA GAA GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain