SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene116

Length: 403 nt

UniGene Fasta

>biog3_v1.0_unigene116
CTCAGAAGATTCAACGGAGGCGACAGAGGCTAACGGTTTAAAACACGACATTTCTACGAAAATGCGCTTTGCAGACATCGGCTGCGGTTTCGGTGGGCTCCTAGTTAAGCTTTCAACGATGTTTCCCTCGAAATTAATGATAGGCATGGAGCTCCGTGACAAGGTAAGCGAATACGTTAAAGAACGGATTTTAGCCCTAAGAAAAGCTCACCCTGGGCAATATCAGAACATATCTGTGGTCAGAACAAATTCTATGAAATTTCTTCCGAATTATTTTGAGAAAGGGGAACTGGAGAAAATGTTCTTTCTGTTCCCTGATCCGCACTTTAAAGAAAAGAATCACCGCCGCAGGGTTATCAGCGTTCCGTTGCTCGCAGAGTACGCGTATGCGATGGCGGTGGGA

Ace file of the UniGene biog3_v1.0_unigene116

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7434	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	tRNA (guanine-N(7)-)-methyltransferase n=2 Tax=Andropogoneae RepID=TRMB_MAIZE	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	trna (guanine-n -)-methyltransferase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	tRNA (guanine-N(7)-)-methyltransferase.	EC:2.1.1.33	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	tRNA modification	GO:0006400	Biological Process	76%
Blast2go	methylation	GO:0032259	Biological Process	76%
Blast2go	tRNA (guanine-N7-)-methyltransferase activity	GO:0008176	Molecular Function	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	tRNA (guanine-N-7) methyltransferase	IPR003358	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACV6

Fln msg: Distance to subject end: 74 aas, your sequence is shorter than subject: 134 - 315

Fln protein: SEDSTEATEANGLKHDISTKMRFADIGCGFGGLLVKLSTMFPSKLMIGMELRDKVSEYVKERILALRKAHPGQYQNISVVRTNSMKFLPNYFEKGELEKMFFLFPDPHFKEKNHRRRVISVPLLAEYAYAMAVG

Protein Length: 135

Fln nts: CTCAGAAGATTCAACGGAGGCGACAGAGGCTAACGGTTTAAAACACGACATTTCTACGAAAATGCGCTTTGCAGACATCGGCTGCGGTTTCGGTGGGCTCCTAGTTAAGCTTTCAACGATGTTTCCCTCGAAATTAATGATAGGCATGGAGCTCCGTGACAAGGTAAGCGAATACGTTAAAGAACGGATTTTAGCCCTAAGAAAAGCTCACCCTGGGCAATATCAGAACATATCTGTGGTCAGAACAAATTCTATGAAATTTCTTCCGAATTATTTTGAGAAAGGGGAACTGGAGAAAATGTTCTTTCTGTTCCCTGATCCGCACTTTAAAGAAAAGAATCACCGCCGCAGGGTTATCAGCGTTCCGTTGCTCGCAGAGTACGCGTATGCGATGGCGGTGGGA

Fln Alignment:

Contig116___EDSTEATEANGLKHDISTKMRFADIGCGFGGLLVKLSTMFPSKLMIGMELRDKVSEYVKERILALRKAHPGQYQNISVVRTNSMKFLPNYFEKGELEKMFFLFPDPHFKEKNHRRRVISVPLLAEYAYAMAVG
D5ACV6________________EDSAKVTEGNGLKPDISTKIRFADIGCGFGGLLVKLSTMFPSKLMIGMELRDKVSEYVKDRILALRKAHPGQYQNISVVRTNSMKFLPNYFEKGELEKMFFLFPDPHFKEKNHRRRVISVPLLAEYAYAMAIG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain