SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene91

Length: 386 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene91
GCAGACCATCATGGCAATAGAAGCCATAGGTGGTCTTCGTGTGCTTGCAATTAACATTCTTGGTCGATTTTTGTCAAATCGTGATAATAACATCCGATACGTGGCTCTGAATATGCTAATGAAGGCAATCACTGTAGATTTTCAAGCGGTACAGAGGCATCGAACAACCATCGTAGAATGTGTCAAGGACTCTGATGCCTCAATTAGGAAAAGAGCCCTTGAACTCGTATTCCTTCTCGTGAATGATAGTAATGTGAAGCCATTGACAAAGGAATTATTGGAGTACTTGGAAGTAAGTGATCCTGAATTCAAGGGCGATCTTACCGCCAAGATCTGCTCCATTGTAGAAAAGTTTGCCCCAAGTAAACTATGGTATATTGAACATT

Ace file of the UniGene biog3_v1.0_unigene91 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15200	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	AP-1 complex subunit gamma-2, putative n=1 Tax=Ricinus communis RepID=B9S4M0_RICCO	-	-	66%
FL-Next	sp=AP-1 complex subunit gamma-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	81%
Blast2go	ap-1 complex subunit gamma-2	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	IPR008152	-	-
Sma3	Clathrin adaptor, gamma-adaptin, appendage	IPR008153	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Adaptor protein complex AP-1, gamma subunit	IPR017107	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZUI6

Fln msg: Distance to subject end: 437 aas, your sequence is shorter than subject: 128 - 862

Fln protein: QTIMAIEAIGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDFQAVQRHRTTIVECVKDSDASIRKRALELVFLLVNDSNVKPLTKELLEYLEVSDPEFKGDLTAKICSIVEKFAPSKLWYIEH

Protein Length: 129

Fln nts: GCAGACCATCATGGCAATAGAAGCCATAGGTGGTCTTCGTGTGCTTGCAATTAACATTCTTGGTCGATTTTTGTCAAATCGTGATAATAACATCCGATACGTGGCTCTGAATATGCTAATGAAGGCAATCACTGTAGATTTTCAAGCGGTACAGAGGCATCGAACAACCATCGTAGAATGTGTCAAGGACTCTGATGCCTCAATTAGGAAAAGAGCCCTTGAACTCGTATTCCTTCTCGTGAATGATAGTAATGTGAAGCCATTGACAAAGGAATTATTGGAGTACTTGGAAGTAAGTGATCCTGAATTCAAGGGCGATCTTACCGCCAAGATCTGCTCCATTGTAGAAAAGTTTGCCCCAAGTAAACTATGGTATATTGAACATT

Fln Alignment:

Contig91___QTIMAIEAIGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDFQAVQRHRTTIVECVKDSDASIRKRALELVFLLVNDSNVKPLTKELLEYLEVSDPEFKGDLTAKICSIVEKFAPSKLWYIE
Q9ZUI6_______________QTIMSIEENGGLRVLAINILGKFLSNRDNNIRYVALNMLMRSLTVDSQAVQRHRATILECVKDSDASIQKRALELIYLLVNENNVKPLAKELIEYLEVSEQDFKGDLTAKICSIVEKFAPEKIWYID

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
101	33		66		0.997452
103	66		33		0.997452
104		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain