SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene88

Length: 255 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene88
CCTAGTAGGCAGAATTTTGAGGTATTGGGTAATATGAAAACGCCAAGTAACCCCTCGGCTGCAAAGATGTATCATTCTGTCAATTCAGGACCACAACGCAGATTGTCTGTGGAAAGACAGGGCACAAATCAAGAGCAGTTCTTCAAAACTAATGGCAAACAGGCTTGTTATCAGCTTCCAATTAAAAATCTTGAAGGCCCTCCAATTGTGGCTCGAAATTCTGTGGGCTTCACCAGCAAACCTGTTTATAACATT

Ace file of the UniGene biog3_v1.0_unigene88 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8054	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative serine/threonine protein kinase [Arabidopsis thaliana] gb\|AAK25900.1\|AF360190_1 putative kinase [Arabidopsis thaliana] gb\|AAK64081.1\| putative kinase [Arabidopsis thaliana] gb\|AEE84141.1\| putative serine/threonine protein kinase [Arabidopsis thal	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	cyclin-dependent kinase f-4-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR77

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 85 - 468

Fln protein: PSRQNFEVLGNMKTPSNPSAAKMYHSVNSGPQRRLSVERQGTNQEQFFKTNGKQACYQLPIKNLEGPPIVARNSVGFTSKPVYNI

Protein Length: 86

Fln nts: CCTAGTAGGCAGAATTTTGAGGTATTGGGTAATATGAAAACGCCAAGTAACCCCTCGGCTGCAAAGATGTATCATTCTGTCAATTCAGGACCACAACGCAGATTGTCTGTGGAAAGACAGGGCACAAATCAAGAGCAGTTCTTCAAAACTAATGGCAAACAGGCTTGTTATCAGCTTCCAATTAAAAATCTTGAAGGCCCTCCAATTGTGGCTCGAAATTCTGTGGGCTTCACCAGCAAACCTGTTTATAACATT

Fln Alignment:

Contig88___PSRQNFEVLGNMKTPSNPSAAKMYHSVNSGPQRRLSVERQ--GTNQEQFFKTNGKQACYQLPIKNLEGPPIVARNSVGFTSKPV
B8LR77_______________PGRQNFEVLANMKTSSNPSAAKMYHSVNSGPQRRLSVERQSQGTNQEQFFKTNGKQACYRLPIKNVEGPPLVDGNSVGFISKDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain