SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene83

Length: 854 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene83

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene137	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	photosystem II stability/assembly factor HCF136 [Arabidopsis thaliana] sp\|O82660.1\|P2SAF_ARATH RecName: Full=Photosystem II stability/assembly factor HCF136, chloroplastic; Flags: Precursor emb\|CAA75723.1\| HCF136 protein [Arabidopsis thaliana] dbj\|BAB0982	-	-	77%
FL-Next	sp=Photosystem II stability/assembly factor HCF136, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	83%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein complex assembly	GO:0006461	Biological Process	86%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	86%
Blast2go	plastid organization	GO:0009657	Biological Process	86%
Blast2go	chloroplast stromal thylakoid	GO:0009533	Cellular Component	86%
Blast2go	chloroplast photosystem II	GO:0030095	Cellular Component	86%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II HCF136, stability/assembly factor	IPR016705	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O82660

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 239 - 403

Fln protein: ETKDGGASWVPRSIPAAEDEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGENWERIPLSSQLPGDLVYIQATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNxxxxxxHNRTSARRIQNMGWRADGGLWLLVRGGGLYLSRGSGITEEFDEVPISSRGFGILDVGYRSKDEAWAAGGSGILLRTVNGGKTWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGILLRYLG*

Protein Length: 240

Fln nts: GGAAACAAAGGATGGGGGGGCCTCCTGGGTTCCCCGCTCAATCCCTGCAGCAGAAGATGAGGACTTCAATTACAGATTCAATTCCATAAGTTTTAAGGGAAAGGAGGGTTGGATAGTTGGAAAGCCAGCTATTTTACTGCACACTTCTGATGCTGGAGAAAACTGGGAGCGTATACCTCTAAGTTCTCAACTTCCTGGGGATCTGGTTTATATCCAAGCAACTGGTGAAAAGAGTGCAGAGATGGTCACAGATGAAGGCGCTATTTATGTGACTTCAAATAAAGGATACAATTGGAAGGCTGCTGTGCAAGAAACTGTTTCTGCTACCTTAAACxxxxxxxxxxxxxxxxxxCACAACAGAACAAGTGCTCGCAGGATTCAGAACATGGGTTGGCGTGCAGATGGTGGACTGTGGCTTCTTGTACGTGGCGGTGGTCTCTACCTTAGCAGAGGCTCAGGGATCACTGAGGAGTTTGATGAAGTACCAATTTCAAGTAGGGGTTTTGGCATTCTTGATGTTGGGTATCGTTCAAAGGATGAAGCTTGGGCAGCTGGAGGCAGTGGCATTTTGCTGAGGACAGTAAATGGTGGAAAAACATGGATCCGTGACAAGGCTGCAGATAATATTGCAGCTAATCTTTATGCTGTGAAGTTTATTGATGAAAAGAAGGGCTTCGTGTTGGGAAATGATGGGATTCTTCTTCGGTATTTGGGATGATTAACTATATATTCATCTTAGATTATAATTCTTTGGAGGAAGAAGATTTTTTAGCTTTGTCGGCATGTATAAGTCACTGTAATCAATGGCATGCAATGGAGGACTCAGTTTTGTAGTACCGATGACTTTCTTACATT

Fln Alignment:

Contig83___ETKDGGASWVPRSIPAAEDEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGENWERIPLSSQLPGDLVYIQATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRHIGSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPYWQPHNRTSARRIQNMGWRADXXXXXXXXXXXXXXXXXXXITEEFDEVPISSRGFGILDVGYRSKDEAWAAGGSGILLRTVNGGKTWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGILLRYLG
O82660_______________ETKDGGSTWNPRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
259	12		87		0.992554
261	12		87		0.992554
262		87		12	0.992554
269		14		85	0.993533
270	14		85		0.993533
272			85	14	0.993533
314	83	16			0.994512
316		83		16	0.994512
366	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain