SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene78

Length: 392 nt

UniGene Fasta

>biog3_v1.0_unigene78
CTTAGGTACATATCCAATCCTTATGTTTATTGAATCCTAAGGATTGCACACGCTTCTATTGCTTGGCCTTTTGTCGAATTCAAGGATTGAACACGCTTGAATTGAAAATCCGCTCTGTGATTAATCAAAACTGCCAAACTTGAGAAATATTTTTAGGTCTACGAATATGGCAATGGCTTCTATTCTGCAATCTGTCGGGAATGAGGTTGTAGGTGGGGATCAAAATCTCTTGAGTTCTGTGGTGCCCTTATTGAAGCTCATATGCCTGAGCAGCATAGGACTGCTTCTAGCACATCCTAAGATAAACTTAATCTCCAGGGAAACATTCAAGCTTCTTAGCAAGCTTGTCTTTGCACTGTTTCTCCCATGCCTCATCTTCACAGAGCTGGGGA

Ace file of the UniGene biog3_v1.0_unigene78

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13514	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	auxin efflux carrier-like protein [Arabidopsis thaliana] gb\|AAG51701.1\|AC016972_20 hypothetical protein; 37307-38680 [Arabidopsis thaliana] gb\|AAK76667.1\| unknown protein [Arabidopsis thaliana] gb\|AAL85106.1\| unknown protein [Arabidopsis thaliana] gb\|AEE3	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	auxin efflux carrier family protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	auxin polar transport	GO:0009926	Biological Process	81%
Blast2go	transmembrane transport	GO:0055085	Biological Process	81%
Blast2go	auxin:hydrogen symporter activity	GO:0009672	Molecular Function	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Ribose 5-phosphate isomerase, type A	IPR004788	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTN6

Fln msg: Distance to subject end: 379 aas, your sequence is shorter than subject: 75 - 452

Fln protein: MAMASILQSVGNEVVGGDQNLLSSVVPLLKLICLSSIGLLLAHPKINLISRETFKLLSKLVFALFLPCLIFTELG

Protein Length: 76

Fln nts: CTTAGGTACATATCCAATCCTTATGTTTATTGAATCCTAAGGATTGCACACGCTTCTATTGCTTGGCCTTTTGTCGAATTCAAGGATTGAACACGCTTGAATTGAAAATCCGCTCTGTGATTAATCAAAACTGCCAAACTTGAGAAATATTTTTAGGTCTACGAAT_-_ATGGCAATGGCTTCTATTCTGCAATCTGTCGGGAATGAGGTTGTAGGTGGGGATCAAAATCTCTTGAGTTCTGTGGTGCCCTTATTGAAGCTCATATGCCTGAGCAGCATAGGACTGCTTCTAGCACATCCTAAGATAAACTTAATCTCCAGGGAAACATTCAAGCTTCTTAGCAAGCTTGTCTTTGCACTGTTTCTCCCATGCCTCATCTTCACAGAGCTGGGGA

Fln Alignment:

Contig78___MASILQSVGNEVVGGDQNLLSSVVPLLKLICLSSIGLLLAHPKINLISRETFKLLSKLVFALFLPCLIFTELG
C0PTN6_______________MAYFLQSVGNEIVGGHQNLLSSVVPLLKLLCLSSIGLVLAHPKINLISKETFKLLSKLVFALFLPCLIFTELG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain