SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene50

Length: 770 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene50 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5569	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	E3 ubiquitin ligase BIG BROTHER [Arabidopsis thaliana] ref\|NP_001030922.1\| E3 ubiquitin ligase BIG BROTHER [Arabidopsis thaliana] sp\|Q8L649.1\|BB_ARATH RecName: Full=E3 ubiquitin ligase BIG BROTHER; AltName: Full=Protein ENHANCER OF DA1-1 emb\|CAD32249.1\| p	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	e3 ubiquitin-protein ligase	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
477	33			66	1.0
479		66		33	1.0
481	83			16	0.994512
542	12		87		0.992554
543	12	87			0.992554
545		87	12		0.992554
675	12			87	0.992554
676		12	87		0.992554
677	12	87			0.992554
720		85	14		0.993533
735		71		28	1.0
736			71	28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain