SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene44

Length: 1472 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene44 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25207	56/59
SustainPine v2.0	sp_v2.0_unigene61947	2/59

Source	Descriptions	Term	Type	Identity
AutoFact	HVA22-like protein i [Arabidopsis thaliana] sp\|Q8LE10.2\|HA22I_ARATH RecName: Full=HVA22-like protein i; Short=AtHVA22i gb\|ABF19006.1\| At5g42560 [Arabidopsis thaliana] gb\|AED94826.1\| HVA22-like protein i [Arabidopsis thaliana]	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	hva22-like protein i	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	TB2/DP1/HVA22-related protein	IPR004345	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQE5

Fln msg:

Fln protein: MTSFITRGIILLLGYAYPAFECFKIVERNKPEIEQLIFWCQYWIIIAALTVFERVGDAFISWLPMYSEAKLAFIVYLWYPKTKGSTYVYETFVKPFVAKHETDIDRNLLELKTRAGDMIVLYGRKSTIYMQARFIDILQYVASQSPRNRPVQSVQQPQQAVAGVPAAVPQQPGLTKVRSRQGQPPTINHQPTPATGSQPTQAVVSDPREPMQPAAPDSGENASTSASESTEEMEVDPAEAKTGQLVPSDQNMEHVIRMTRNRLKQTRKKT*

Protein Length: 272

Fln nts: GATGTTTCTGCGATCGCTGCTGCAATCTTTGAAGGGATCCCGCCTGCTAAGTATCGGGGGCTTACCGCAAAAGCTTACATCGGAAGCAGGCGGAGTGTTTGTTCAAGGATTTCAGTCAAGGAAAGGCTTCCACACTTGCCAGATCAGTACTCGGATTAACCCCTGAACATCAGAAAT_-_ATGACTTCTTTTATAACCAGAGGCATCATATTGCTCCTTGGTTACGCATACCCTGCATTTGAGTGTTTTAAAATCGTAGAAAGGAACAAGCCGGAGATAGAGCAACTGATATTCTGGTGTCAATATTGGATCATAATTGCAGCATTAACTGTTTTTGAGCGAGTAGGAGATGCTTTCATTTCATGGCTACCTATGTACAGTGAAGCAAAGCTTGCATTCATTGTTTATTTGTGGTATCCCAAAACAAAGGGATCAACCTATGTATATGAAACCTTCGTTAAGCCTTTTGTAGCAAAACATGAGACAGATATTGACAGGAATTTACTTGAATTAAAGACAAGGGCAGGAGACATGATCGTTCTTTATGGGAGGAAGTCTACAATTTATATGCAGGCCAGATTCATTGATATTCTTCAATATGTTGCTTCACAGTCACCAAGGAATCGGCCTGTCCAGTCTGTTCAGCAGCCTCAACAAGCTGTAGCAGGTGTACCAGCTGCGGTTCCACAACAACCTGGACTAACTAAAGTACGTTCTCGTCAAGGCCAACCACCTACTATCAACCATCAGCCTACTCCAGCCACAGGTTCTCAACCAACACAAGCTGTGGTTTCAGATCCCCGAGAGCCTATGCAACCAGCTGCTCCTGATTCAGGAGAAAATGCATCCACTTCAGCCAGTGAGAGTACAGAAGAGATGGAGGTTGACCCAGCAGAAGCTAAGACAGGACAATTGGTTCCTAGTGATCAAAACATGGAACATGTTATCCGTATGACTCGAAACAGGCTAAAACAAACTCGTAAGAAGACATAG___ATTGGATGTCAGATTTAATTGAATGGTTTACAAAGTCAAGCTTACTGCCAAAGTTGCGTGGTTAAAGCTTTCACCCTGCCATATGATTTGGTGGGAGATCTGATTTCAGGGCTCTGTATATTGGTTTCCATTGTAAGTGGAATTTCTTTATCCTGTGAAAAGTATGGTTGGTATGGTCAGCATTTTTCATGTAGATAAAATGCACTTGATTTCTCTAGTGTGGCAGGAAAGCCTGTGATTAAGAGACTTGCTTTACAATTGGTTGGCCACGTATTGGTAGTTGTTGAAATTTCTTAAGCAATATGTAATGAAACATGGAAGGCTTTACATCTCTGCCAATCTATCATGTGCCCATGTTTGTATTTTGTTGCAAGCATTTGCAGCTCATTTCATGGTATTGCATTTTTTGTATTGCAAGTCATTTGACTCGTGAAGATTACAACATTGGTGATTCCCTGACAAAAAAATGGAAGAACATGTGC

Fln Alignment:

Contig44___MTSFITRGIILLLGYAYPAFECFKIVERNKPEIEQLIFWCQYWIIIAALTVFERVGDAFISWLPMYSEAKLAFIVYLWYPKTKGSTYVYETFVKPFVAKHETDIDRNLLELKTRAGDMIVLYGRKSTIYMQARFIDILQYVASQSPRNRXXXXXXXXXXXXXXXXXXXXXXPGLTKVRSRQGQPPTINHQPTPAT-GSQPTQAVVSDPREPMQPAAPDXXXXXXXXXXXXXXXXEVDPAEAKTGQLVPSDQNMEHVIRMTRNRLKQTRKK
B8LQE5_______________MTSFITRGIILLLGYAYPAFECFKIVERNKPEIEQLIFWCQYWIIIAALTVFERVGDAFISWLPMYSEAKLAFIVYLWYPKTKGSTYVYEAFVKPFVTKHETDIDRNLLELKTRAGDMIVLYGRKSTIYIQARFIDILQYVAAQSPRNR-------PVEPRPTVPAAGPRQDGLT-IGSRQAQPPVINHRSTPAAPDSGENTSSASESTEEME----------------------VDPAEAKTGQLVPHDQNMEQVIRMTRSKLKQTRKK

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
147	33		66		0.997452
150	25		50	25	0.995533
151	50			50	1.0
206	66		33		0.997452
207		66		33	0.997452
216	25		75		0.996473
217	25		75		0.996473
218		75		25	0.996473
219		75	25		0.996473
220	75			25	0.996473
309	33	66			0.997452
337	75			25	0.996473
339	75			25	0.996473
359	80			20	0.995493
360		80	20		0.995493
383		83	16		0.994512
390	14	85			0.993533
391	14	85			0.993533
392		85		14	0.993533
393	85		14		0.993533
394		85		14	0.993533
458	83	16			0.994512
459		83		16	0.994512
507	16			83	0.994512
508	16			83	0.994512
510	83		16		0.994512
511			83	16	0.994512
528	16	83			0.994512
529			83	16	0.994512
531	83			16	0.994512
652	14		85		0.993533
655		85		14	0.993533
765		90		10	0.90298
877		85		14	0.999981
1047		90		10	0.90298
1048	11	88			0.923564
1050	11			88	0.923564
1083			88	11	0.923564
1099		75		25	1.0
1132	20	20			0.99255
1392		25		75	0.996473
1393	25			75	0.996473
1394		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain