SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24

Length: 2111 nt

UniGene Fasta

>biog3_v1.0_unigene24
AAGCTATTCATACCAATTTATTAGGAGGGCAAGAGGAAGATAATTTCAGTCTCATTCTTCTTATCTTTATCGTTGTTCGATACCTTCATAACCAGCTATGGATAAGCATTTCTCGTTATCAGAATGCAATAAGCAAGCGCCAGATTCAATCCAAAAGTATCGAGTTTGAGCAGGTTGATCGAGAGGGAACCTGGGACGATTATATTATTTTCTATGCTGTGTTGCTTTTCCTCGCTCATGCCGTCATTCCAGGAGTTTCGAATCTTCCTCTGTGGAATACGAAAGGTCTTATTGTGACAAGTTTGGCTCACGTCGGGCCTGTCGAATTCACCTATTACTGGGCACATAGAGCTCTGCATCATCATTTTCTGTATAGCCGGTACCATTCGCATCACCACTCTTCTTTTGTGACGGAACCAATTACATCTGTGGTGCATCCATTTGCAGAACATATTTTGTATGCAGCGATCTTTTCCATGGCTGAACTACCTCTAGCTATCACCAATACTAATTCCATTGGTGTTCTGTTTGGGTACCATTTATGGTTCGATTTAATGAACAATATGGGGCACTGCAACTTCGAGTTTCTCCCCCAGTTTGCATTTAAGATTTTCCCCTTTCTGAAATACTTCATGTACACACCCTCATTTCATTCTCTTCATCATTCTCAAGTGCATACCAACTTCAGTCTCTTCATGCCAATTTACGACTATCTTTACGGAACAGTCGACAAATCTTCGGATACTCTCTACGAGGCTGCAAGTGAAGGGCGCAAAGAGAGCGTTGATTTCATATACCTAACGCATTTAACAAACCTGCTGTCGGTTTTTCATTTGCGTTTCGGTTTTGCCTCATTTGCGGCAAAGCCATACTCTTCCAAATGGTATATAAGGATGTTGTGGCCTATAAGCAACGCAGTCATGCTGGTCTTATCGACTTTTGGAAGAACATTCACCTCCGAAAAGAATCGGCTAGATCGATTGCATATGCAGACATGGGTGATTCCACGATACACTTTTCAGTATTTTCTACCTTCTGAGAAACCAAGGATTAACCAGCTCATTGAAGATTCCATATTGGACGCGGAGAAGAAAGGAGCGAAAGTTATAAGTCTGGGCCTTCTCAACCAGAATGAAGACTTGAACCGAAGTGGAAAACAGTTCGTCAAGCAACACGAGAATCTCAGAATTCGAATTGCTGATGGTAGTACTTTGGCAGCGGCTTTTATTTTGAATTCAATTCCAGAGAAGGAAACGTCCGAGGTGCTTATTATTTCTGGGGGAGCATGCAAGTTGGAATCGGGTATAGCAAGAGTGCTATGTGAGCGTGGGGTTAGGGTCCAGCTTCTGGTGGACTCAGAAGAACAAATCGAGAAATCAAAGATGAAAGTCCCTCGCGAATTTAGACATAATCTCTTCCACGTCGCAAGCTACCAGTCATGCATTACCTGCAAGATATGGATTGTAGGCAGATGGCTTAGTCGAGGTGATCAGATGAAGGCACCCGAGGGCACTCGTTTTATTCCGCTTCTTCCCTTTCCGATACCGAATGTTCGTGACGACTGCACTTACGAGACCGTTCCTTCAATGAGTGTGCCCAAAAATCTTGAGAATCTGCATGCCTGTGAGAACGGGTTGCCTAGAAGAGTGCTCAGCGCATGGCGAGTTGGAGGAATTGTGCATGCACTAGAAGATTGGAATCATCATGAATTTGATGATGTCATTGACAGCGACACCGTTACTCGAGTATGGGAAGCTGCCATCAAACATGGTTTTCATCCTTTCAATTCGATCAAAGCAAATTAATGATGTTTACGTAGATGGAGAGTCCTAATAAATTCCTCACTTCTGAGATATTGAGGTTTCAGACTGGTTTTAAAGAAAATAGTAGTTTTTATTGCTGGTACTACAATTTCAGTCAGTTAAATAGGTAGTCAGTGAGTTATATAGGTAGTTTTAATGACTGTACTCTCAATAGTAAGTATTAGCCTGATGTCAATTTGAAAAGAATAGGGGTGAGGGGTAAACTTTTATTTGATTAATGGTGATATGTTAAAAGACATGCAGCTTTGGTATAGGTATAATATTTACATTATATGCTATTTTGACATT

Ace file of the UniGene biog3_v1.0_unigene24

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17838	47/108
SustainPine v2.0	sp_v2.0_unigene61254	60/108
SustainPine v2.0	sp_v2.0_unigene62601	1/108

Source	Descriptions	Term	Type	Identity
AutoFact	CER1; CER1 (ECERIFERUM 1); octadecanal decarbonylase (EC:4.1.99.5)	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	protein wax2-like	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	alkane biosynthetic process	GO:0043447	Biological Process	69%
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	69%
Blast2go	cuticle development	GO:0042335	Biological Process	69%
Blast2go	response to water deprivation	GO:0009414	Biological Process	69%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	69%
Blast2go	aldehyde catabolic process	GO:0046185	Biological Process	69%
Blast2go	cutin biosynthetic process	GO:0010143	Biological Process	69%
Blast2go	anther development	GO:0048653	Biological Process	69%
Blast2go	defense response to fungus	GO:0050832	Biological Process	69%
Blast2go	aldehyde decarbonylase activity	GO:0071771	Molecular Function	69%
Blast2go	exine	GO:0043668	Cellular Component	69%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A835

Fln msg: your sequence is shorter than subject: 601 - 623

Fln protein: AIHTNLLGGQEEDNFSLILLIFIVVRYLHNQLWISISRYQNAISKRQIQSKSIEFEQVDREGTWDDYIIFYAVLLFLAHAVIPGVSNLPLWNTKGLIVTSLAHVGPVEFTYYWAHRALHHHFLYSRYHSHHHSSFVTEPITSVVHPFAEHILYAAIFSMAELPLAITNTNSIGVLFGYHLWFDLMNNMGHCNFEFLPQFAFKIFPFLKYFMYTPSFHSLHHSQVHTNFSLFMPIYDYLYGTVDKSSDTLYEAASEGRKESVDFIYLTHLTNLLSVFHLRFGFASFAAKPYSSKWYIRMLWPISNAVMLVLSTFGRTFTSEKNRLDRLHMQTWVIPRYTFQYFLPSEKPRINQLIEDSILDAEKKGAKVISLGLLNQNEDLNRSGKQFVKQHENLRIRIADGSTLAAAFILNSIPEKETSEVLIISGGACKLESGIARVLCERGVRVQLLVDSEEQIEKSKMKVPREFRHNLFHVASYQSCITCKIWIVGRWLSRGDQMKAPEGTRFIPLLPFPIPNVRDDCTYETVPSMSVPKNLENLHACENGLPRRVLSAWRVGGIVHALEDWNHHEFDDVIDSDTVTRVWEAAIKHGFHPFNSIKAN*

Protein Length: 602

Fln nts: AAGCTATTCATACCAATTTATTAGGAGGGCAAGAGGAAGATAATTTCAGTCTCATTCTTCTTATCTTTATCGTTGTTCGATACCTTCATAACCAGCTATGGATAAGCATTTCTCGTTATCAGAATGCAATAAGCAAGCGCCAGATTCAATCCAAAAGTATCGAGTTTGAGCAGGTTGATCGAGAGGGAACCTGGGACGATTATATTATTTTCTATGCTGTGTTGCTTTTCCTCGCTCATGCCGTCATTCCAGGAGTTTCGAATCTTCCTCTGTGGAATACGAAAGGTCTTATTGTGACAAGTTTGGCTCACGTCGGGCCTGTCGAATTCACCTATTACTGGGCACATAGAGCTCTGCATCATCATTTTCTGTATAGCCGGTACCATTCGCATCACCACTCTTCTTTTGTGACGGAACCAATTACATCTGTGGTGCATCCATTTGCAGAACATATTTTGTATGCAGCGATCTTTTCCATGGCTGAACTACCTCTAGCTATCACCAATACTAATTCCATTGGTGTTCTGTTTGGGTACCATTTATGGTTCGATTTAATGAACAATATGGGGCACTGCAACTTCGAGTTTCTCCCCCAGTTTGCATTTAAGATTTTCCCCTTTCTGAAATACTTCATGTACACACCCTCATTTCATTCTCTTCATCATTCTCAAGTGCATACCAACTTCAGTCTCTTCATGCCAATTTACGACTATCTTTACGGAACAGTCGACAAATCTTCGGATACTCTCTACGAGGCTGCAAGTGAAGGGCGCAAAGAGAGCGTTGATTTCATATACCTAACGCATTTAACAAACCTGCTGTCGGTTTTTCATTTGCGTTTCGGTTTTGCCTCATTTGCGGCAAAGCCATACTCTTCCAAATGGTATATAAGGATGTTGTGGCCTATAAGCAACGCAGTCATGCTGGTCTTATCGACTTTTGGAAGAACATTCACCTCCGAAAAGAATCGGCTAGATCGATTGCATATGCAGACATGGGTGATTCCACGATACACTTTTCAGTATTTTCTACCTTCTGAGAAACCAAGGATTAACCAGCTCATTGAAGATTCCATATTGGACGCGGAGAAGAAAGGAGCGAAAGTTATAAGTCTGGGCCTTCTCAACCAGAATGAAGACTTGAACCGAAGTGGAAAACAGTTCGTCAAGCAACACGAGAATCTCAGAATTCGAATTGCTGATGGTAGTACTTTGGCAGCGGCTTTTATTTTGAATTCAATTCCAGAGAAGGAAACGTCCGAGGTGCTTATTATTTCTGGGGGAGCATGCAAGTTGGAATCGGGTATAGCAAGAGTGCTATGTGAGCGTGGGGTTAGGGTCCAGCTTCTGGTGGACTCAGAAGAACAAATCGAGAAATCAAAGATGAAAGTCCCTCGCGAATTTAGACATAATCTCTTCCACGTCGCAAGCTACCAGTCATGCATTACCTGCAAGATATGGATTGTAGGCAGATGGCTTAGTCGAGGTGATCAGATGAAGGCACCCGAGGGCACTCGTTTTATTCCGCTTCTTCCCTTTCCGATACCGAATGTTCGTGACGACTGCACTTACGAGACCGTTCCTTCAATGAGTGTGCCCAAAAATCTTGAGAATCTGCATGCCTGTGAGAACGGGTTGCCTAGAAGAGTGCTCAGCGCATGGCGAGTTGGAGGAATTGTGCATGCACTAGAAGATTGGAATCATCATGAATTTGATGATGTCATTGACAGCGACACCGTTACTCGAGTATGGGAAGCTGCCATCAAACATGGTTTTCATCCTTTCAATTCGATCAAAGCAAATTAA___TGATGTTTACGTAGATGGAGAGTCCTAATAAATTCCTCACTTCTGAGATATTGAGGTTTCAGACTGGTTTTAAAGAAAATAGTAGTTTTTATTGCTGGTACTACAATTTCAGTCAGTTAAATAGGTAGTCAGTGAGTTATATAGGTAGTTTTAATGACTGTACTCTCAATAGTAAGTATTAGCCTGATGTCAATTTGAAAAGAATAGGGGTGAGGGGTAAACTTTTATTTGATTAATGGTGATATGTTAAAAGACATGCAGCTTTGGTATAGGTATAATATTTACATTATATGCTATTTTGACATT

Fln Alignment:

Contig24___AIHTNLLGGQEEDNFSLILLIFIVVRYLHNQLWISISRYQNAISKRQIQSKSIEFEQVDREGTWDDYIIFYAVLLFLAHAVIPGVSNLPLWNTKGLIVTSLAHVGPVEFTYYWAHRAXXXXXXXXXXXXXXXXXXVTEPITSVVHPFAEHILYAAIFSMAELPLAITNTNSIGVLFGYHLWFDLMNNMGHCNFEFLPQFAFKIFPFLKYFMYTPSFHSLHHSQVHTNFSLFMPIYDYLYGTVDKSSDTLYEAASEGRKESV-DFIYLTHLTNLLSVFHLRFGFASFAAKPYSSKWYIRMLWPISNAVMLVLSTFGRTFTSEKNRLD-RLHMQTWVIPRYTFQYFLPSEKPRINQLIEDSILDAEKKGAKVISLGLLNQNEDLNRSGKQFVKQHENLRIRIADGSTLAAAFILNSIPEKETSEVLIISGGACKLESGIARVLCERGVRVQLLVDSEEQIEKSKMKVPREFRHNLFHVASYQSCITCKIWIVGRWLSRGDQMKAPEGTRFIPLLPFPIPNVRDDCTYETVPSMSVPKNLENLHACENGLPRRVLSAWRVGGIVHALEDWNHHEFDDVIDSDTVTRVWEAAIKHGFHP
D5A835_______________AVHTNLYGGKEADNWCFHILLLTSLRYVTYQLWATFSNMYCLSHRYKICKKGAEFDQMDREWDWDNFLLLQAFMATAAHHFLPFFRDMPAWNAGGLICLAILRMGPAEVLYYWAHRAFHKDFLFQRYHSLHHAAIVLQPQTAGTATFLEHIGLTIIMAVPMVGASWMGGASMGMIYIYCLLFDFLRYMGHSNVEIVPETIFRCLPPLKYLIYTPLYHTLHHTEMDTNFCPFMPLYDYLGHTINSKSWDLHRSMSAGQVEDVPDYVFLAHIVDVLSSLHVRFLLRGFCSTPFATWWFLLPLWPVVIPVALAMWVWAKTFVNTGHRLKGRLH-QTWIVPRFGFQYFIPFAQAGINNLIQDAILSADKMGVKVISLAALNKNEALNGGGTLFVNRLPDLRVRVVHGNTLTAAVILNEL-NPDVKEV-FLTGATSKLGRVIALYLCRKGIRVMMLTYSKERFKSIQSEAPPEFQNFLVQVTKYEAAQNCKTWIVGKWIAYKEQTWAPVGCHLHQFVVPPIFELRKDCTYGKLAGMQLPDAVEGLSTCEYTMPRRCVHACHAGGILHSLEGWEHHEV-GAIDVNKIDMVWEAALKHGFKP

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
1096	75		25		1.0
1118	10		90		0.90298
1121	10	90			0.90298
1130	22	77			0.999999
1137	90			10	0.90298
1142		20		80	0.999996
1198			11	88	0.923564
1199			88	11	0.923564
1200		77		22	0.999999
1239		80		20	0.999996
1296	12			87	0.992554
1297		12	87		0.992554
1300	87			12	0.992554
1320	14			85	0.993533
1323			85	14	0.993533
1354	16		83		0.994512
1355		16	83		0.994512
1357		83		16	0.994512
1390	88			11	0.923564
1731			77	22	0.999999
1732		77		22	0.999999
1783		14		85	0.993533
1805	14			85	0.993533
1806	85	14			0.993533
1809	14		71	14	0.984337
1812			83	16	0.994512
1851		20		80	0.995493
1854	20		80		0.995493
1856	20			80	0.995493
1904			80	20	0.999996
1939			90	10	0.90298
1941		12	87		0.992554
1943	12		87		0.992554
1944		12		87	0.992554
1958	12			87	0.992554
1959		12		87	0.992554
1961	87			12	0.992554
1972		85	14		0.993533
1997	14			85	0.993533
2000	85			14	0.993533
2033		33		66	0.997452
2047		33		66	0.997452
2048	33		66		0.997452
2085	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain