SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13

Length: 455 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13
AACAGTGGTTCAACGCAGAGTACGCGGGGAGCAGAAGCAGAAGAAGAGAGAGCGAATTAGTGCAGAAAGACATTCATTTGATTAATTAACACACTATGGCAATGGCTGCGCTCACCGCTGCAACCACAACGACCACAGCTGCCCATGTTCATGGTCTCTGCAGCAGCAACAGCGGCTTCAACGGTCGCAAACTCTCCGTCGCGCCGCCTCGCGTGTGCACGCCCGCAACTTCCAAGAGGAAGAGAGCCGGGGGCGTGGCTGTGGCCAAGTATGGGGAGAAGAGCATTTACTTCGATCTGGAGGACATCAGCAACACCACTGGGGCTTGGGACCTGTACGGCTCCGATACCCCCTCTCCCTACAACGGTTTGCAGAGCAAATTCTTTGAGACTTTTGCGAAGCCGTTCACCAAGAGAGGGCTGCTGCTCAAGTTCCTTTTGTTGTCGGGAGGAGGG

Ace file of the UniGene biog3_v1.0_unigene13 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23150	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Photosystem I subunit H n=1 Tax=Lycoris radiata RepID=D1MFT3_LYCRD	-	-	1.0e-31	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	h chain improved model of plant photosystem i	-	-	0.0	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem I PsaH, reaction centre subunit VI	IPR004928	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMB1

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 120 - 152

Fln protein: MAMAALTAATTTTTAAHVHGLCSSNSGFNGRKLSVAPPRVCTPATSKRKRAGGVAVAKYGEKSIYFDLEDISNTTGAWDLYGSDTPSPYNGLQSKFFETFAKPFTKRGLLLKFLLLSGGG

Protein Length: 121

Fln nts: AACAGTGGTTCAACGCAGAGTACGCGGGGAGCAGAAGCAGAAGAAGAGAGAGCGAATTAGTGCAGAAAGACATTCATTTGATTAATTAACACACT_-_ATGGCAATGGCTGCGCTCACCGCTGCAACCACAACGACCACAGCTGCCCATGTTCATGGTCTCTGCAGCAGCAACAGCGGCTTCAACGGTCGCAAACTCTCCGTCGCGCCGCCTCGCGTGTGCACGCCCGCAACTTCCAAGAGGAAGAGAGCCGGGGGCGTGGCTGTGGCCAAGTATGGGGAGAAGAGCATTTACTTCGATCTGGAGGACATCAGCAACACCACTGGGGCTTGGGACCTGTACGGCTCCGATACCCCCTCTCCCTACAACGGTTTGCAGAGCAAATTCTTTGAGACTTTTGCGAAGCCGTTCACCAAGAGAGGGCTGCTGCTCAAGTTCCTTTTGTTGTCGGGAGGAGGG

Fln Alignment:

Contig13___HVHGLCSSNSGFNGRKLSVAPPRVCTPATSKRKRAGGVAVAKYGEKSIYFDLEDISNTTGAWDLYGSDTPSPYNGLQSKFFETFAKPFTKR
B8LMB1_______________HVHGLCSSSSGFNGRKLSVALPRVCAPATSKRKRAGGVAVAKYGEKSIYFDLEDISNTTGAWDLYGSDTPSPYNPLQSKFFETFAKPFTKR

SNPs (tot: 3)

Position	A %	G %	T %	Probability
320	33	66		0.997452
321	33		66	0.997452
322		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain