SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10

Length: 439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene10
GACGATAAGCTGGTGCCATGCCTTAGGGGAGTTTTCACTGGCCAGGGCGAGCAGCAACAGAAAGCGGTACAAGAATCGGTGGCAAACTTTCTTATATTGGAGGAAGCTCTGCGAATGAACCCCTGCTCCTCGGGGAAACTGTATTTTGGAGGAGACGAGATCGGCTTTGTTGACATCGCATTGGGTGGTCTCTCAGTATTTGTGAAAGCCCTGCAGAAGGCTATTAGTTCTGTTTTGATAGATGAGGAGAAGATGCCGCTGTTAAGCGCATGGATGGATCGATTCTGTGAGGCCAATGGAGTGAAAGAAGTTATGCCGGATCCGGCCAAGGTACTGGAATTTATATCCGCCATGAGAGTCAAATTTACATCACCACCTGCTACCAAGTAGGGGAAGCACTTTTGGACACCAAAGTAGGGACAGATATGATCCTCTCTAA

Ace file of the UniGene biog3_v1.0_unigene10 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29297	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Probable glutathione S-transferase n=1 Tax=Picea mariana RepID=O65056_PICMA	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	tau class glutathione s-transferase	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2I2

Fln msg: your sequence is shorter than subject: 130 - 239

Fln protein: DDKLVPCLRGVFTGQGEQQQKAVQESVANFLILEEALRMNPCSSGKLYFGGDEIGFVDIALGGLSVFVKALQKAISSVLIDEEKMPLLSAWMDRFCEANGVKEVMPDPAKVLEFISAMRVKFTSPPATK*

Protein Length: 131

Fln nts: GACGATAAGCTGGTGCCATGCCTTAGGGGAGTTTTCACTGGCCAGGGCGAGCAGCAACAGAAAGCGGTACAAGAATCGGTGGCAAACTTTCTTATATTGGAGGAAGCTCTGCGAATGAACCCCTGCTCCTCGGGGAAACTGTATTTTGGAGGAGACGAGATCGGCTTTGTTGACATCGCATTGGGTGGTCTCTCAGTATTTGTGAAAGCCCTGCAGAAGGCTATTAGTTCTGTTTTGATAGATGAGGAGAAGATGCCGCTGTTAAGCGCATGGATGGATCGATTCTGTGAGGCCAATGGAGTGAAAGAAGTTATGCCGGATCCGGCCAAGGTACTGGAATTTATATCCGCCATGAGAGTCAAATTTACATCACCACCTGCTACCAAGTAG___GGGAAGCACTTTTGGACACCAAAGTAGGGACAGATATGATCCTCTCTAA

Fln Alignment:

Contig10___DDKLVPCLRGVFTGQGEQQQKAVQESVANFLILEEALRMNPCSSGKLYFGGDEIGFVDIALGGLSVFVKALQKAISSVLIDEEKMPLLSAWMDRFCEANGVKEVMPDPAKVLEFISAMRVKFTSPPA
A9P2I2_______________DDKLLPCVRGVFTGQGEQQQKAVEESVANFLVLEEALRTSLCFSGKPYFGGDEIGFVDIALGGMLAFVKALEKATNSVLIDVEKMPLLSAWMDRFCKADEVKEVMPDPAKLLEFIIAMKVRFASPPA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
26	33	66			0.997452
28			33	66	0.997452
188	25			75	0.996473
189		75		25	0.996473
190			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain