SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8

Length: 499 nt

UniGene Fasta

>biog3_v1.0_unigene8
AATGTCGAAAACTTTATGAAGAGCAGGGGAAAGCTGGATCCTTGCCTTGCATCGTGTGTAGCAGCAGGTTTCCAAAAGATTTCATAGATACGCACAGCTTGGTTATGCATACGTTCAATTCTCTAAAAGTTGGCCTTAGAGCAGAACACTTGGGCCTGCATAAGGCTTTGTGTGTCTTGATGGGTTGGAATCACGTTGTACCACCAGGTAATGCGAAAGGGTACCAGTTACTTCCATTGCCTGATGCAAGAGCCATGAAAGAAGATCTTATTCTATGGCCACCACTGGTTATTGTGCATAATGCAAACAGTGAAATGAAGAAAGATGGGTCTGAGCATGTTGTTAGCAATCTAGATATGGATGAGATTCTTCAAGGACTTGGATTCAGCAATGGCAAAATGAAGGTAGTAAATGGAAGTAGTACCATTCAAGGCACACTACTTGTCAAATTCTCTCCAACTTTTTCTGGGTTACAGGAGGCTGAACGATTGCATACATT

Ace file of the UniGene biog3_v1.0_unigene8

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12296	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	WS01018.B21_E24 SS-R-N-A-11 Picea sitchensis cDNA clone WS01018_E24 3', mRNA sequence.	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	52%
Blast2go	uncharacterized protein	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	XS domain	IPR005380	-	0.0	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RTR8

Fln msg: Distance to subject end: 75 aas, your sequence is shorter than subject: 165 - 505

Fln protein: CRKLYEEQGKAGSLPCIVCSSRFPKDFIDTHSLVMHTFNSLKVGLRAEHLGLHKALCVLMGWNHVVPPGNAKGYQLLPLPDARAMKEDLILWPPLVIVHNANSEMKKDGSEHVVSNLDMDEILQGLGFSNGKMKVVNGSSTIQGTLLVKFSPTFSGLQEAERLHT

Protein Length: 166

Fln nts: AATGTCGAAAACTTTATGAAGAGCAGGGGAAAGCTGGATCCTTGCCTTGCATCGTGTGTAGCAGCAGGTTTCCAAAAGATTTCATAGATACGCACAGCTTGGTTATGCATACGTTCAATTCTCTAAAAGTTGGCCTTAGAGCAGAACACTTGGGCCTGCATAAGGCTTTGTGTGTCTTGATGGGTTGGAATCACGTTGTACCACCAGGTAATGCGAAAGGGTACCAGTTACTTCCATTGCCTGATGCAAGAGCCATGAAAGAAGATCTTATTCTATGGCCACCACTGGTTATTGTGCATAATGCAAACAGTGAAATGAAGAAAGATGGGTCTGAGCATGTTGTTAGCAATCTAGATATGGATGAGATTCTTCAAGGACTTGGATTCAGCAATGGCAAAATGAAGGTAGTAAATGGAAGTAGTACCATTCAAGGCACACTACTTGTCAAATTCTCTCCAACTTTTTCTGGGTTACAGGAGGCTGAACGATTGCATACATT

Fln Alignment:

Contig8___RKLYEEQGKAGSLPCIVCSSRFPKDFIDTHSLVMHTFNSLKVGLRAEHLGLHKALCVLMGWNHVVPPGNAKGYQLLPLPDARAMKEDLILWPPLVIVHNANSEMKKDGSEHVVSNLDMDEILQGLGFSNGKMKVVNGSSTIQGTLLVKFSPTFSGLQEAERL
B9RTR8______________RKRYLENGKQGRLMCLVCG-RSSKDFPDTHALVMHTYNSDNADLRVDHLGLHKALCILMGWNYSKPPDNAKVYQLLPADVAATNQDDLVMWPPMVIIHNTVTGKGKDGRIEGLGNKAMDNKIRDLGFSGGKSKSLYGRDGHLGITLIKFSSDQFGLKEALQL

SNPs (tot: 4)

Position	A %	C %	T %	Probability
98	20	80		0.995493
99	20		80	0.995493
256	16	83		0.994512
260	80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain