SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7

Length: 455 nt

UniGene Fasta

>biog3_v1.0_unigene7
AATGTCGATGTTGGGGTGAATAAAAGGGGTCGGTTCTTGAAGATTTCTGAAGCATCTACAACCTACAGTCGCAGCACAATCATTGTACCTGTAGGAAACACAAGAAAAGATGGTTGGGCAGCATTTAGAAATATTTTAGGAGAGATAAATGAAGCTTCCCAACAAGCTTCTGGCCCATCCGAACATTTGGGAGGGCTTTCCGATGAAGTTGGCGCTGGTTTCCTATCAGGTGGAAGTGGAGAAGCAGCATTTGAGGCAGACACAACAGGTGACAGAGCCATGGCGTTAACTCCAGCAGAAGATACGGGTGAAGCAGTTGTTTCAAAAGTGATTCGAGCTGATCAGAAACGTTTCTTTTTTGATCTTGGGTGTAACAACCGAGGCCAGTTTCTTAGAATTTCTGAGGTGATAGGTCCTGACCGTTCAGCTATTATTGTTCCTGTATCTGCTACATT

Ace file of the UniGene biog3_v1.0_unigene7

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene558	6/7

Source	Descriptions	Term	Type	Identity
AutoFact	transcription factor Pur-alpha 1 [Arabidopsis thaliana] gb\|AAL31888.1\|AF419556_1 At2g32080/F22D22.17 [Arabidopsis thaliana] gb\|AEC08632.1\| transcription factor Pur-alpha 1 [Arabidopsis thaliana]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	74%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	74%
Blast2go	cytoplasm	GO:0005737	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	PUR-alpha/beta/gamma, DNA/RNA-binding	IPR006628	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADJ0

Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 151 - 295

Fln protein: NVDVGVNKRGRFLKISEASTTYSRSTIIVPVGNTRKDGWAAFRNILGEINEASQQASGPSEHLGGLSDEVGAGFLSGGSGEAAFEADTTGDRAMALTPAEDTGEAVVSKVIRADQKRFFFDLGCNNRGQFLRISEVIGPDRSAIIVPVSAT

Protein Length: 152

Fln nts: AATGTCGATGTTGGGGTGAATAAAAGGGGTCGGTTCTTGAAGATTTCTGAAGCATCTACAACCTACAGTCGCAGCACAATCATTGTACCTGTAGGAAACACAAGAAAAGATGGTTGGGCAGCATTTAGAAATATTTTAGGAGAGATAAATGAAGCTTCCCAACAAGCTTCTGGCCCATCCGAACATTTGGGAGGGCTTTCCGATGAAGTTGGCGCTGGTTTCCTATCAGGTGGAAGTGGAGAAGCAGCATTTGAGGCAGACACAACAGGTGACAGAGCCATGGCGTTAACTCCAGCAGAAGATACGGGTGAAGCAGTTGTTTCAAAAGTGATTCGAGCTGATCAGAAACGTTTCTTTTTTGATCTTGGGTGTAACAACCGAGGCCAGTTTCTTAGAATTTCTGAGGTGATAGGTCCTGACCGTTCAGCTATTATTGTTCCTGTATCTGCTACATT

Fln Alignment:

Contig7___DVGVNKRGRFLKISEASTTYSRSTIIVPVGNTRKDGWAAFRNILGEINEAS------QQASGPSEHLGGLSDEVGAGFLSGGSGEAAFEADTTGDRAMALTPAEDTGEAVVSKVIRADQKRFFFDLGCNNRGQFLRISEVIGPDRSAIIVPVS
D5ADJ0______________DVGENQRGRFLKVSEASVTRNRSTIIVPAGNAKEDGWSAFRDILVEINEASQLLLPPQQPSGPSEHLRALSDAVGPGFISGESVQTTSLNGTMGDRAMGLATG-DAGGVVMAKVIRAEQKRFFFDLGSNSRGQFLRISEVTGADRSVIILPVS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
243	85		14		0.993533
244	85		14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain