SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene37

Length: 305 nt

UniGene Fasta

>biog3_v1.0_unigene37
AAGCCAATTGATACAGCAAGTCCCAAGGGTCAAGAAAGCCTGATTATGTGGGCAAGACCACTCTTACAGGATGGGAATATGGAAAGTCTTGCTGACAAATGTTTGCAAAATGTTTATGATACAAATGAAAATGCATAGAATGATGCTTGCTGCTACGCTTTGTCTAAGGGAAACATCTCATTACCGTCCTTGCATGAGCCGAATTTTAAAACTACTACAAGGAGAAGATGAGAGGACTGACTGGGCGTGGTGCCAGAATACAATGATCAAGGATATGGATACTTCAGATGAGGACGACATTGTAG

Ace file of the UniGene biog3_v1.0_unigene37

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1973	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative serine/threonine kinase [Oryza sativa Japonica Group] gb\|EAZ29240.1\| hypothetical protein OsJ_13303 [Oryza sativa Japonica Group]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Ribosomal protein S8e, conserved site	IPR018283	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVK7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 32 aas, putative chimeric sequence, atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning, your sequence is shorter than subject: 77 - 124

Fln protein: KPIDTASPKGQESLIMWARPLLQDGNMESLADKCLQNVYDTNENA*NDACCYALSKGNISLPSLHEPNFKTTTRRR*

Protein Length: 78

Fln nts: AAGCCAATTGATACAGCAAGTCCCAAGGGTCAAGAAAGCCTGATTATGTGGGCAAGACCACTCTTACAGGATGGGAATATGGAAAGTCTTGCTGACAAATGTTTGCAAAATGTTTATGATACAAATGAAAATGCATAGAATGATGCTTGCTGCTACGCTTTGTCTAAGGGAAACATCTCATTACCGTCCTTGCATGAGCCGAATTTTAAAACTACTACAAGGAGAAGATGA___GAGGACTGACTGGGCGTGGTGCCAGAATACAATGATCAAGGATATGGATACTTCAGATGAGGACGACATTGTAG

Fln Alignment:

Contig37___KPIDTASPKGQESLIMWARPLLQDGNMESLADKCLQNVYDTNENA*NDACCYALSKGNISLPSLHE
A9NVK7_______________KPIDTKIPKGQESLILWARSLLQDRNMRNLADKCLQDVSDTNEMRQNDPCCYTLSKANTSLPALHE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
268	75			25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain