SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19

Length: 547 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene19
GGTAACAAGTGACACGCTTGCAGTTGGGGGTCATGCTATGGGAACTGCATGGAACGTGTTTAAGATTCGGAAGACCATCGATCCTGTAACGAATGGAAGGCTATCAGCATCGGCTTTGAAGGTTGTAAAACTCAAGAAAACCAGCGACGCAATCAGGACTGCATCAAAAACTGCATCCAAGAATTTACGCTAAGGGTGTTGCTCGAATTGAAATGCTTCTCTTTCTATATTTTTATCTTGATGGCTCCCCACATGTATATGTATTTATTTTGATGTAAATAGAATCTGAAAGTATGAAGATAATTTTCGCAAGACCACACAAGTTAGGCTTATGTAAACGCTGTGATTTGGAGTATATAGGGGAGAGTATATTAACAATGTAACCCCCTTCGGATAAAATCGATGTTTCTAACTGTGTAGAATGCCTGTAAAAGAATTGAAGCCAAGTAGAGCTTTTATTTTTATATATTTGAATTAGGCTGAGTTTATGCAGGGCCAATCTCAATGTCATTGTGGGATGTTATCATCAAGATTGCTGGAAGTTTAA

Ace file of the UniGene biog3_v1.0_unigene19 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27954	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Senescence-associated protein 12 n=1 Tax=Zea mays RepID=B6U1F2_MAIZE	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	senescence dehydration-associated protein	-	-	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Senescence/spartin-associated	IPR009686	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV63

Fln msg: your sequence is shorter than subject: 64 - 443

Fln protein: VTSDTLAVGGHAMGTAWNVFKIRKTIDPVTNGRLSASALKVVKLKKTSDAIRTASKTASKNLR*

Protein Length: 65

Fln nts: GGTAACAAGTGACACGCTTGCAGTTGGGGGTCATGCTATGGGAACTGCATGGAACGTGTTTAAGATTCGGAAGACCATCGATCCTGTAACGAATGGAAGGCTATCAGCATCGGCTTTGAAGGTTGTAAAACTCAAGAAAACCAGCGACGCAATCAGGACTGCATCAAAAACTGCATCCAAGAATTTACGCTAA___GGGTGTTGCTCGAATTGAAATGCTTCTCTTTCTATATTTTTATCTTGATGGCTCCCCACATGTATATGTATTTATTTTGATGTAAATAGAATCTGAAAGTATGAAGATAATTTTCGCAAGACCACACAAGTTAGGCTTATGTAAACGCTGTGATTTGGAGTATATAGGGGAGAGTATATTAACAATGTAACCCCCTTCGGATAAAATCGATGTTTCTAACTGTGTAGAATGCCTGTAAAAGAATTGAAGCCAAGTAGAGCTTTTATTTTTATATATTTGAATTAGGCTGAGTTTATGCAGGGCCAATCTCAATGTCATTGTGGGATGTTATCATCAAGATTGCTGGAAGTTTAA

Fln Alignment:

Contig19___VTSDTLAVGGHAMGTAWNVFKIRKTIDPVTNGRLSASALKVVKLKKTSDAIRTASK
A9NV63_______________VTHDTFAVAGHAIGTAWNVTKVRKAINPVSNGTISASALKALKLKKASKAITSASK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
333	33	66			0.997452
336			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain