SustainPineDB

Assembly Name: SustainPine v1.2

UniGene Name: sp_v1.2_unigene49447

Length: 2017 nt

Origin of reads: Biogeco_2 Uagpf Uma Biogeco_1

UniGene Fasta

>sp_v1.2_unigene49447
TTCTCAATTTGATCTGAAAGCCTATTTTGGAATTTTATAAAAACCTCGTTTTGTTCCTTTCGATTCGCGTAGATCTCAGGAAATAGATTAGCTTGGATAATGTTGCCGGAATCGGCTGTATGAAACGAGGCTCTGTTTAGCCCTTTTAGTATTTTGTTAATTAAGTGTGCAATTGGGGTTGAGGGTTTTGGTTGCTTGGCTGTCAATGCCACCGAGGGGCTTATGGGGTTTTGACTCCCCCCAGATGGCGGAGGAATTCAATAAAGTCGTTGGCCTGTCTGGGAGGATCCCTCGGGGGAGCTTTAATGCCGCGTTCAATTTCTCTGGTTCCTGGGAATCCGATGCTGTGTCCACCAAGAGTCTAGCAATGGATGGAATGTTTATAGCATTATATAGGGTTTGCTTGTCGAAATCCGCGTTGGTATTGTGCCCTGAAGTCAAGCGTGCGGTTCCAAATACATGGGAACCAGCCTCTTTAGCAAGCTTCATTGAAAATTTTGGAACCCATATTATTATATCTGTGACAATTGGTGGTGGAGATGTGATATACGTTAAACAGCACCACTCATCTCCACTATCTTCAACAGACATTGAGAATTATGTAAAAGAGATTGCTGGCCAAAGATTTTCAGATTCGGAAAGTAATAGCAGCTTTGGAGTAAGCACATTGAAAGACAAGGATGTTACAATCATATTCAGAAGGAGAGGAGGTGATGATCTTGTCCAAAGTCACAAAGTTTGGGTGGATACTATTGGCCGTAATCCTGATGTTATCAATATGTCATTTGTACCTGTAGTATCTCTGTTGGAAGGGCTTCCTGGAAAGGACCATCTCAGACGTGCTATTGATCTCTACCTAGAATACAAACCTCCAATCGAAGAGCTTCAGTATTTCTTGGAATTTCAAGTACCTAGTACATGGGCTCCCCTTTCCAGTGACTTGCCAGGACAAGAAAGGAAGGAACCAGTATGCCCAACACTGCAATTCAGTTTGATGGGTCCTAAGCTTCATGTTAGCACATCTCAGGTAACTGTTGGTCGAAAACCAGTGACAGGGCTTCGGTTATGCCTTGAGGGAAGGAAGCAAAACAGACTTGCAATTAATTTGCAACATTTAGTCTCTCTACCCAAAATCCTACAGCCACACTGGGATGCACATGTTGCAATTGGGCCTCCTAAGTGGCAAGGACCAGAAGAGCAAGATAGTAGATGGTTTGAACCTGTTCAATGGAAGAACTTTTCACATGTCAGCAGTGCTCCTGTAGAGAACAGTGAAACATGGATAGGGGACCTCTCTGGGGTTTATATTGTTACTGGAGCACAACTTGGTGTCTGGGATTTTGGGAATAAAAGTGTTTTGCATCTCAGGCTTTTATTTTCTAAGGTTCCAGGTTGTACCATACGGAGATCAGTATGGGATCATACACCTGTATCACATCAAAAGGTTGGCATGCATACATCAAACCAATCAGCATTGAAGATCTCAGGTAATCCCAGTTCCGGATCAACTGTCCAAATAGGAAAGCTGGCAAAGTTCGTTGATGTGACAGAGATGACCAAAGGGCCTCAAGATATGTCCTGGCCATTGGTTGGTCACTGGTGCAAAGTTGGGGGTTGAGAAAGGAAGGATTGTATTGCGTGTAAAATATTCCCTCTTAAATTACTAAGATATGAGAGACGAATGTGATTGGATGATGATTGAAATATGCCAGTGCTTGGCTGCACAAGGTTGTATACGAATGTAGAGAACAGGAGCATCACCTTCTCATGTAGCAGAGTTTTAAACAGCATCTATTCGGAAAATTCTTTTCACAGGTCGGTGTGTAAAACACTTCATGGGGTTTCTCAATGCTAGTGTTCATTTGTTTCTGTCTATCAAGACTTCCCAACGGGATTTATAATTGGAGGCTTGCATTCTTGAATCCGGTTGTATATTGCTGTTAACAAACTGTCCTGATGGACTGTATTGTGATTTTTTATGGCACTAATAGGAATATGAGAAAGTCGTGCCAACAAA

Ace file of the UniGene sp_v1.2_unigene49447

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MAC/Perforin domain-containing protein [Arabidopsis thaliana] gb\|AAG51760.1\|AC068667_39 unknown protein; 124288-121737 [Arabidopsis thaliana] gb\|AAL75908.1\| At1g29690/F15D2_24 [Arabidopsis thaliana] gb\|ABO38750.1\| At1g29690 [Arabidopsis thaliana] gb\|AEE31	-	-	65%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	66%
Blast2go	protein	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arsenite-transporting ATPase.	EC:3.6.3.16	-	0.0	76%
Blast2go	Cinnamyl-alcohol dehydrogenase.	EC:1.1.1.195	-	0.0	76%

Source	KEGGs	Term	Type	Identity
Blast2go	Phenylpropanoid biosynthesis	00940		76%
Blast2go	Biosynthesis of phenylpropanoids	01061		76%
Blast2go	Metabolic pathways	01100		76%
Blast2go	Biosynthesis of secondary metabolites	01110		76%
Blast2go	Glutathione gamma-glutamylcysteinyltransferase.	EC:2.3.2.15	-	76%

Source	GOs	Term	Type	Identity
Blast2go	arsenite transport	GO:0015700	Biological Process	76%
Blast2go	indole glucosinolate catabolic process	GO:0042344	Biological Process	76%
Blast2go	immune response	GO:0006955	Biological Process	76%
Blast2go	phytochelatin biosynthetic process	GO:0046938	Biological Process	76%
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	76%
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	76%
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	76%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	76%
Blast2go	cell death	GO:0008219	Biological Process	76%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%
Blast2go	cadmium ion binding	GO:0046870	Molecular Function	76%
Blast2go	arsenite-transmembrane transporting ATPase activity	GO:0015446	Molecular Function	76%
Blast2go	copper ion binding	GO:0005507	Molecular Function	76%
Blast2go	cinnamyl-alcohol dehydrogenase activity	GO:0045551	Molecular Function	76%
Blast2go	glutathione gamma-glutamylcysteinyltransferase activity	GO:0016756	Molecular Function	76%
Blast2go	cytosol	GO:0005829	Cellular Component	76%
Blast2go	phytochelatin transmembrane transporter activity	GO:0071992	Biological Process	76%
Blast2go	phytochelatin transmembrane transport	GO:0071994	Biological Process	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Membrane attack complex component/perforin (MACPF) domain	IPR020864	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9H2C4

Fln msg: Overlapping hits, possible frame ERROR between 1612 and 1560, atg_distance in limit (1-15): atg_distance = 7, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 488 - 557

Fln protein: MPPRGLWGFDSPQMAEEFNKVVGLSGRIPRGSFNAAFNFSGSWESDAVSTKSLAMDGMFIALYRVCLSKSALVLCPEVKRAVPNTWEPASLASFIENFGTHIIISVTIGGGDVIYVKQHHSSPLSSTDIENYVKEIAGQRFSDSESNSSFGVSTLKDKDVTIIFRRRGGDDLVQSHKVWVDTIGRNPDVINMSFVPVVSLLEGLPGKDHLRRAIDLYLEYKPPIEELQYFLEFQVPSTWAPLSSDLPGQERKEPVCPTLQFSLMGPKLHVSTSQVTVGRKPVTGLRLCLEGRKQNRLAINLQHLVSLPKILQPHWDAHVAIGPPKWQGPEEQDSRWFEPVQWKNFSHVSSAPVENSETWIGDLSGVYIVTGAQLGVWDFGNKSVLHLRLLFSKVPGCTIRRSVWDHTPVSHQKVGMHTSNQSALKISGNPSSGSTVQIGKLAKFVDVTEMTxxxxxxxxxxxxxxxxxxxVEKGRIVLRVKYSLLNY*

Protein Length: 489

Fln nts: TTCTCAATTTGATCTGAAAGCCTATTTTGGAATTTTATAAAAACCTCGTTTTGTTCCTTTCGATTCGCGTAGATCTCAGGAAATAGATTAGCTTGGATAATGTTGCCGGAATCGGCTGTATGAAACGAGGCTCTGTTTAGCCCTTTTAGTATTTTGTTAATTAAGTGTGCAATTGGGGTTGAGGGTTTTGGTTGCTTGGCTGTCA_-_ATGCCACCGAGGGGCTTATGGGGTTTTGACTCCCCCCAGATGGCGGAGGAATTCAATAAAGTCGTTGGCCTGTCTGGGAGGATCCCTCGGGGGAGCTTTAATGCCGCGTTCAATTTCTCTGGTTCCTGGGAATCCGATGCTGTGTCCACCAAGAGTCTAGCAATGGATGGAATGTTTATAGCATTATATAGGGTTTGCTTGTCGAAATCCGCGTTGGTATTGTGCCCTGAAGTCAAGCGTGCGGTTCCAAATACATGGGAACCAGCCTCTTTAGCAAGCTTCATTGAAAATTTTGGAACCCATATTATTATATCTGTGACAATTGGTGGTGGAGATGTGATATACGTTAAACAGCACCACTCATCTCCACTATCTTCAACAGACATTGAGAATTATGTAAAAGAGATTGCTGGCCAAAGATTTTCAGATTCGGAAAGTAATAGCAGCTTTGGAGTAAGCACATTGAAAGACAAGGATGTTACAATCATATTCAGAAGGAGAGGAGGTGATGATCTTGTCCAAAGTCACAAAGTTTGGGTGGATACTATTGGCCGTAATCCTGATGTTATCAATATGTCATTTGTACCTGTAGTATCTCTGTTGGAAGGGCTTCCTGGAAAGGACCATCTCAGACGTGCTATTGATCTCTACCTAGAATACAAACCTCCAATCGAAGAGCTTCAGTATTTCTTGGAATTTCAAGTACCTAGTACATGGGCTCCCCTTTCCAGTGACTTGCCAGGACAAGAAAGGAAGGAACCAGTATGCCCAACACTGCAATTCAGTTTGATGGGTCCTAAGCTTCATGTTAGCACATCTCAGGTAACTGTTGGTCGAAAACCAGTGACAGGGCTTCGGTTATGCCTTGAGGGAAGGAAGCAAAACAGACTTGCAATTAATTTGCAACATTTAGTCTCTCTACCCAAAATCCTACAGCCACACTGGGATGCACATGTTGCAATTGGGCCTCCTAAGTGGCAAGGACCAGAAGAGCAAGATAGTAGATGGTTTGAACCTGTTCAATGGAAGAACTTTTCACATGTCAGCAGTGCTCCTGTAGAGAACAGTGAAACATGGATAGGGGACCTCTCTGGGGTTTATATTGTTACTGGAGCACAACTTGGTGTCTGGGATTTTGGGAATAAAAGTGTTTTGCATCTCAGGCTTTTATTTTCTAAGGTTCCAGGTTGTACCATACGGAGATCAGTATGGGATCATACACCTGTATCACATCAAAAGGTTGGCATGCATACATCAAACCAATCAGCATTGAAGATCTCAGGTAATCCCAGTTCCGGATCAACTGTCCAAATAGGAAAGCTGGCAAAGTTCGTTGATGTGACAGAGATGACCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTGAGAAAGGAAGGATTGTATTGCGTGTAAAATATTCCCTCTTAAATTACTAA___GATATGAGAGACGAATGTGATTGGATGATGATTGAAATATGCCAGTGCTTGGCTGCACAAGGTTGTATACGAATGTAGAGAACAGGAGCATCACCTTCTCATGTAGCAGAGTTTTAAACAGCATCTATTCGGAAAATTCTTTTCACAGGTCGGTGTGTAAAACACTTCATGGGGTTTCTCAATGCTAGTGTTCATTTGTTTCTGTCTATCAAGACTTCCCAACGGGATTTATAATTGGAGGCTTGCATTCTTGAATCCGGTTGTATATTGCTGTTAACAAACTGTCCTGATGGACTGTATTGTGATTTTTTATGGCACTAATAGGAATATGAGAAAGTCGTGCCAACAAA

Fln Alignment:

sp_v1.2_unigene49447___QMAEEFNKVVGLSGRIPRGSFNAAFNFSGSWESDAVSTKSLAMDGMFIALYRVCLSKSALVLCPEVKRAVPNTWEPASLASFIENFGTHIIISVTIGGGDVIYVKQHHSSPLSSTDIENYVKEIAGQRFSDSESNSSFGVSTLKDKDVTIIFRRRGGDDLVQSHKVWVDTIGRNPDVINMSFVPVVSLLEGLPGKDHLRRAIDLYLEYKPPIEELQYFLEFQVPSTWAPLSSDLPGQERKEPVCPTLQFSLMGPKLHVSTSQVTVGRKPVTGLRLCLEGRKQNRLAINLQHLVSLPKILQPHWDAHVAIGPPKWQGPEEQDSRWFEPVQWKNFSHVSSAPVENSETWIGDLSGVYIVTGAQLGVWDFGNKSVLHLRLLFSKVPGCTIRRSVWDHTPVSHQKVGMHTSNQSALKISGNPSSGSTVQIGKLAKFVDVTEMTKGPQxxxxxxxxxxxxxxAKLGVEKGRIVLRVKYSLLNY
B9H2C4_______________EMAGQFNEKSGISGRIPLGSFNGMFNFTGSWQVDAAGTKSLAMVGHFIPLYKVQIAKVNLVLLEEVKRAVPSSWDPASLASFIESYGTHIVTSATIGGRDVVYIRQHQASPLSVSDIENYVKDIADQRFQDSTSTSIAAPLKYKDKDVTVIFRRRGGDDLEQSHAKWAETVQLAPDVINMTFTPIVSLLERVPGIKHLARAVDLYLEYKPPIEDLQYFLDFQIAKGWAPEQNNL---QRKEPVCQSLQFSLMGPKLYISPDQVTVGRKPVTGLRLSLEGIKQNRLSIHLQHLVSLPKVLQPHWDAYVAIGAPKWQGPEEQDSRWFEPIKWKNFSHVSTAPIEYADTSIGDLSGVHIVTGAQLGVWDFGAKNVLHLKLLFSKVPGCTIRRSVWDHSPSNPSAQRTNGASSSVPNEKPSNDKKEDGHVGKLAKIVDMSEMSKGPQxxxxxxxxxxxxxxAKLGVDKGKIVLRVKYSLLNY

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
475		88	11		0.923564
478			12	75	0.975346
480			12	87	0.992554
482		12	87		0.992554
485	87			12	0.992554
486	87		12		0.992554
494		12		87	0.992554
498	85	14			0.993533
500	83			16	0.994512
592	75		25		0.996473
757	16	83			0.994512
759	83		16		0.994512
760			16	83	0.994512
761			16	83	0.994512
854			16	83	0.994512
855			83	16	0.994512
858		83		16	0.994512
1035	16		83		0.994512
1052	83		16		0.994512
1175	75			25	0.996473
1282		11		88	0.923564
1436	80			20	0.995493
1586		12		87	0.999964
1590		87	12		0.999964
1595	12		87		0.999964
1603		12		87	0.999964
1660	92	7			0.999664
1661	88	11			1.0
1662	88	3		7	0.999079
1665	86	3	10		1.0
1772			93	6	0.999264
1989	7			28	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain