| General Information |
| Organism: |
Pinus pinaster |
| Tissue: |
several |
| Description: |
Version 2 of the complete assembly of Pinus pinaster. Include sequences from UMA, Biogeco 1, Biogeco 2,UAGPF
|
| Assembly Statistics |
|
| Number of used reads: |
2649757 |
| Mean read length: |
272 |
| Number of unigenes: |
89544 |
| Mean contig length: |
622 |
| SNPs statistics |
|
| Tot. SNPs: |
695404 |
| Unigenes with SNPs: |
44051 |
| Mean SNPs per unigene: |
15.7 |
| SSRs statistics |
|
| Tot. SSRs: |
3724 |
| Mean SSRs per unigene: |
1.1 |
| SSRs di-nucl. : |
282 |
| SSRs tri-nucl. : |
2068 |
| SSRs > tri-nucl. : |
1374 |
| Annotations statistics |
|
| Annotated unigenes: |
68559 |
| Descriptions: |
51380 |
| Gos: |
3697 |
| Interpros: |
5190 |
| ECs: |
550 |
| Keggs: |
140 |
|
| Project components |
|
|
| Assembly components: |
|
| Unigenes file: |
sustainpine_v1.2_unigenes.fasta |
|
| ACE file: |
sustainpine_v1.2.ace |
|
|
| Download annotations for specified unigenes: |
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|
| SFFs: |
| File 1: |
Canovas_RL1.sff, GD4IA4402.sff,GD4IA4403.sff,GD4IA4404.sff, GDTE5QK01.sff |
Not available
|
| File 2: |
Biogeco1 |
Download(NCBI)
|
| File 3: |
Biogeco2 |
Download(NCBI)
|
| File 4: |
UAGPF |
Download(NCBI)
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| SeqTrimNext reports: |
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