SustainPineDB

Assembly Name: SustainPine v1.2

UniGene Name: sp_v1.2_unigene35390

Length: 811 nt

Origin of reads: Uma Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.2_unigene35390

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9RVZ6_RICCO	-	-	59%
FL-Next	sp=Callose synthase 12; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	transferase, transferring glycosyl groups, putative	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	70%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	70%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	70%
Blast2go	reproduction	GO:0000003	Biological Process	70%
Blast2go	defense response signaling pathway, resistance gene-dependent	GO:0009870	Biological Process	70%
Blast2go	pollen development	GO:0009555	Biological Process	70%
Blast2go	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	70%
Blast2go	leaf senescence	GO:0010150	Biological Process	70%
Blast2go	defense response to fungus	GO:0050832	Biological Process	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZT82

Fln msg: Separated hits, possible frame ERROR between 449 and 455, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1328 aas, your sequence is shorter than subject: 270 - 1780

Fln protein: S*PWLSLKDYLDESTGQPALPAYMGENAFLNRVVIPLYNTVKAEAEASLGGKARHSAWRNYDDINEYFWSNRCFAQLGWPLKLDSNFFVQSETRPEGGLQRIRGMLQKQKVGKTGFVEQRSFCNIFRSFDRLWIMYILFLQAAIIVAWxxxRTSFGRVEKRDIQAKLLSVFITWAGLRLLQSALDAGMQYSLVSRETPLQGIRMLLKAIVATVWTILFAVLYSRMWDQRNHDFRWSGDANRKLLNYLEAALAFLSPELLAVLLFIIPWVR

Protein Length: 271

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGATTATCTGGATGAGAGTACGGGACAGCCTGCTTTGCCTGCTTATATGGGGGAAAATGCTTTCTTGAACAGGGTCGTAATCCCTTTGTATAATACTGTTAAGGCTGAAGCAGAAGCGAGCCTTGGTGGGAAGGCTCGCCATTCAGCCTGGAGGAATTATGATGATATAAATGAGTATTTTTGGAGTAACAGGTGCTTCGCACAATTGGGGTGGCCCCTCAAACTGGATAGCAATTTCTTTGTACAGTCTGAGACCAGGCCAGAGGGTGGATTGCAGAGGATCAGGGGCATGCTACAGAAACAGAAGGTAGGGAAGACGGGATTTGTAGAACAACGCTCCTTCTGCAATATTTTCCGCAGTTTTGATCGTCTTTGGATCATGTATATACTTTTTCTGCAAGCTGCAATTATTGTGGCATGGGAxxxxxxAAGGACTTCCTTTGGTAGAGTTGAAAAGAGAGATATACAGGCTAAATTGCTTAGTGTTTTCATAACATGGGCAGGCCTTCGGCTTTTGCAATCTGCGCTTGATGCTGGCATGCAGTACAGTTTAGTGTCAAGAGAGACTCCTTTACAAGGAATAAGAATGCTATTGAAGGCCATTGTGGCAACAGTATGGACCATTCTCTTTGCTGTGCTCTATAGTCGGATGTGGGATCAAAGGAATCATGATTTCAGATGGTCAGGGGATGCGAACAGAAAATTGCTAAACTATCTAGAGGCCGCACTCGCATTCCTCTCTCCTGAGCTGTTGGCTGTGCTTCTTTTTATTATTCCCTGGGTCAGA

Fln Alignment:

sp_v1.2_unigene35390___LKDYLDESTGQPALPAYMGENAFLNRVVIPLYNTVKAEAEASLGGKARHSAWRNYDDINEYFWSNRCFAQLGWPLKLDSNFFVQSETRPEGGLQRIRGMLQKQKVGKTGFVEQRSFCNIFRSFDRLWIMYILFLQAAIIVAWDxxRTSFGRVEKRDIQAKLLSVFITWAGLRLLQSALDAGMQYSLVSRETPLQGIRMLLKAIVATVWTILFAVLYSRMWDQRNHDFRWSGDANRKLLNYLEAALAFLSPELLAVLLFIIPWVR
Q9ZT82_______________LEDCLDENTGQPYLPSLSGENAFLTGVVKPIYDTIQAEIDESKNGTVAHCKWRNYDDINEYFWTDRCFSKLKWPLDLGSNFF------------KSRG----KSVGKTGFVERRTFFYLYRSFDRLWVMLALFLQAAIIVAWExxRQLWNALKARDVQVRLLTVFLTWSGMRLLQAVLDAASQYPLVSRETKRHFFRMLMKVIAAAVWIVAFTVLYTNIWKQKRQDRQWSNAATTKIYQFLYAVGAFLVPEILALALFIIPWMR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
538		25		75	0.996473
638	25		75		0.996473
658	50	50			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain