SustainPineDB

Assembly Name: SustainPine v1.2

UniGene Name: sp_v1.2_unigene33477

Length: 1051 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.2_unigene33477

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	(-)-linalool-like synthase n=1 Tax=Picea sitchensis RepID=Q20HU8_PICSI	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	unknown	-	-	79%

Source	InterPros	Term	Type	Identity
Blast2go	Terpene synthase-like	IPR001906	-	79%
Blast2go	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid	IPR008930	-	79%
Blast2go	Terpenoid synthase	IPR008949	-	79%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PR86

Fln msg: STOP codon was not found. Distance to subject end: 38 aas, your sequence is longer than subject: 350 - 290

Fln protein: MGTRSRNLSLKLLVLNSIPMAVLPILPLPSKSSLHKPLTSSTHDLEPFPTTIPTFGLSARRKAVTPSITMCSTTAVSDAGVKRRIANHHSNLWGDDFIQALSTRYEEPSYRERAERLIKEVKEMFTEIEDGVSITPLNDLLSRLSMVDSIERLGIDRHFKVEIKSALDYVHSYWSEKGIGCGRESGVTDLNSTALGLRTLRLHGYPVSSSVLEHFECEKGRFVTSSVQTEGEIRSIFNLFRASLVAFPNEKIMEDAETFCRRYLKESLQNIPISNLSREIEYVIEYGWHTNLPRLEARNYIDVFGQDEKMPFLNADKLLELAKLDFNIFQSIQQRELKDISRLYEFCYCI

Protein Length: 351

Fln nts: _-_ATGGGGACCAGAAGCCGAAACCTGTCACTTAAACTTTTGGTCCTTAATTCGATTCCAATGGCTGTACTTCCTATCTTACCGTTGCCTTCCAAATCCTCCCTTCACAAACCGCTGACCAGTTCTACTCATGACCTCGAGCCTTTCCCTACAACAATCCCAACTTTTGGACTGAGTGCGCGACGGAAAGCCGTGACACCTTCCATCACCATGTGTTCCACAACCGCTGTATCGGATGCTGGTGTAAAGAGACGCATAGCGAATCATCACTCCAACCTCTGGGGCGACGACTTCATACAGGCTCTCTCCACACGTTATGAGGAGCCTTCATACCGTGAACGCGCAGAGAGACTTATCAAGGAAGTGAAAGAGATGTTCACTGAAATTGAAGATGGGGTATCAATCACTCCCCTCAATGATCTGCTTTCACGGCTTTCCATGGTCGATAGCATCGAACGTTTGGGAATCGATAGGCATTTCAAAGTGGAGATAAAATCAGCGCTGGATTATGTTCACAGTTACTGGAGCGAGAAAGGCATCGGATGTGGCAGAGAAAGTGGTGTTACTGATCTCAACTCAACTGCACTGGGCCTTCGAACTCTTCGGCTACACGGATATCCGGTGTCTTCAAGTGTGTTGGAACACTTTGAATGCGAGAAGGGGCGGTTTGTCACTTCTTCGGTTCAAACGGAAGGAGAGATAAGGAGTATTTTCAATTTATTTCGGGCATCTCTCGTTGCGTTTCCAAATGAGAAAATCATGGAAGACGCTGAAACCTTCTGTAGAAGATATTTAAAAGAATCTCTGCAAAACATTCCGATATCAAATCTTTCACGAGAGATAGAATACGTTATCGAATATGGTTGGCACACAAACCTCCCACGATTGGAAGCACGGAATTACATCGATGTCTTTGGACAGGACGAAAAGATGCCATTTCTGAACGCCGACAAACTTTTAGAACTTGCAAAATTGGACTTCAATATATTTCAATCCATACAACAAAGGGAGTTGAAAGATATATCCAGGTTATATGAATTTTGTTATTGTATTA

Fln Alignment:

sp_v1.2_unigene33477___DLEPFPTTIPTFGLSARRKAVTPSITMCSTTAVSDAGVKRRIANHHSNLWGDDFIQALSTRYEEPSYRERAERLIKEVKEMFTEI--EDGVSITPLNDLLSRLSMVDSIERLGIDRHFKVEIKSALDYVHSYWSEKGIGCGRESGVTDLNSTALGLRTLRLHGYPVSSSVLEHFECEKGRFVTSSVQTEGEIRSIFNLFRASLVAFPNEKIMEDAETFCRRYLKESLQNIPISNLSREIEYVIEYGWHTNLPRLEARNYIDVFG
C0PR86_______________ELKPFRRTVPTLGVCSRGKTLRAPISMCSATAVSGDGVQRRIANHHSNLWDDDFIQSLSTPYQAPSYTQRAQKLIEKVKEMFNSISVEDGVLITPLNDLISRLSVVDSIERLGIDRHFKTEIKSALDYVYSYWSEKGIGCGRESDVTDLNPTALGFRTLRLHGYPVSSGVLEHFKDVKGQFVSSSIQTEGEIRSVLNLFRASLVAFPSEDVMEEAEIFSTTYLQESVQNIPVSSLSREIEYVMEYRWHTNLPRLEARNYIDVFG

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
224	33	66			0.997464
227			33	66	0.997461
228	66		33		0.997461
556	80			20	0.995493
557	80		20		0.995493
559			20	80	0.995493
832	33	66			0.997471
852	33	66			0.997467
858		66		33	0.997476
879		66		33	0.997461

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain