SustainPineDB

Assembly Name: SustainPine v1.2

UniGene Name: sp_v1.2_unigene25633

Length: 1837 nt

Origin of reads: Biogeco_2 Uagpf Uma Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.2_unigene25633

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1685 domain containing protein	-	-	3.0e-21	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	uncharacterized protein	-	-	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1685	IPR012881	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL54

Fln msg:

Fln protein: MMDSALRNSLEERDSFDVEEDLELNEVEENMSMLSLTNRITSSTDDISVDLTGFFSDDDDDYGHEELSYGNMTDDAEEGVGDKLECFKSGSDSNEVVSNASRLLRRRNLNGSRKKSSNACNAIGASVISGYNYKSPLSDLNKPLSKPIDIVYGDADQCRDFSQFKKSRSRRSLYRSSREDWREKAWERKRDQALSEELSCDNNYFSDFQSSKTASDSASEEARADSPYSTLRRTSSTPRVRKLTNVDLDELKGCLDLGFGFNYEEMPELSNTLPALELCYAIGQQFQDDHHQKSSPVSTLDNMDSPNNEGYAQSPIANWKISSPGDHPQEVKERLKVWAQAVACTVRLCS*

Protein Length: 352

Fln nts: GTGACCTTGGCTGTCACTCATTTTTGAGGCCTTGTACTGCAAGTTCTAGAAGTTTGGGTACTATATAAATCTTTGAGATAATTTGGATTACTACGAAACTAAAGATTTTGCAGTGTATGAGAGCTGAAATTTTGCATCTAGAATTCAGGGTTTGAGGGAGTTTGAGGTTAGTAGACTGCAATATTGTGCAGTAGTATCATAAGGTGAAGGAAAAAGAAAGAAAGATTCATCTTCTG_-_ATGATGGATTCTGCTTTGAGAAACTCACTTGAAGAGAGGGATTCATTTGATGTTGAGGAAGATCTGGAACTGAATGAAGTGGAGGAAAATATGTCCATGCTTTCTCTTACCAATAGAATTACCAGTAGTACTGATGATATTTCTGTGGACTTGACTGGTTTCTTCTCTGATGATGATGATGATTATGGCCATGAAGAACTTAGCTATGGGAATATGACAGATGATGCAGAAGAAGGCGTGGGTGATAAATTGGAGTGTTTCAAAAGTGGGTCTGATTCTAATGAGGTTGTGAGTAATGCTAGCAGGCTTTTGAGGAGGAGGAATCTGAATGGGTCACGTAAGAAATCCTCCAATGCCTGTAATGCTATTGGGGCATCTGTTATCTCAGGGTACAACTACAAGTCCCCACTCTCTGATCTAAATAAGCCTCTCAGTAAGCCAATCGATATAGTCTATGGAGATGCAGATCAGTGCAGAGATTTCAGTCAATTTAAGAAAAGTAGAAGCAGAAGAAGCCTATACAGGTCTAGTAGAGAAGACTGGCGTGAGAAGGCTTGGGAAAGGAAAAGAGATCAAGCTCTATCAGAGGAATTGTCTTGCGATAACAATTATTTCAGCGATTTTCAGTCCTCTAAGACAGCTTCTGACTCAGCCAGCGAAGAGGCTAGAGCTGATTCTCCTTATTCAACTTTGAGACGTACTTCTAGTACTCCCAGAGTTAGAAAGCTTACAAACGTGGACTTAGATGAGTTGAAAGGGTGTCTAGATCTGGGATTTGGTTTCAACTATGAAGAAATGCCCGAGCTCTCAAATACCTTGCCAGCCTTGGAGTTATGTTATGCAATAGGCCAGCAGTTTCAAGATGACCACCATCAGAAATCCTCTCCTGTGTCTACTCTTGATAATATGGATTCTCCAAACAATGAGGGCTATGCACAATCTCCTATTGCCAATTGGAAAATCTCCAGCCCAGGAGACCATCCCCAAGAAGTGAAAGAACGATTGAAAGTTTGGGCCCAAGCTGTGGCATGTACTGTTCGTCTCTGCAGCTGA___TACCCAGAAAACAAAAGCAAAATCTCTGTCTGAGGCTTGATCTGTGAGAGCTTATGTCATATTTTGTTGGAGAGTGATGAAGTCTGGAGAGTGTCTATTTCATAGATATATCTGTGGTGCTGCTAGAAAATTATTATTAGGAGATGCTAATGATCTGATGAGTATTATGATATTGGTGTTAGTACAGGCTATCAAAACCCATATCTCTTGACCTCAGATATGGGTGAAAAGCAACCTATCTGAGCCAGAAAAAAAAAGGGAGAAAGCTTGCGGATTGACTGCAAAAAGCATGGCTAATCAACCTTCAAGCATGTTGTCTCATGTGAAATTTTGTGTGTGGGGCGTTCTATAGATGACCAGAGTTCAAACAGACCAGTATTGGCAGCTTGCGAAGAAGTCAGGTTTGAGATTAACTGTCTAACACATTATAATGTAATTAACTAATTTGCTACTAATTATCATTCCTTTTGGTTTTGTATTATAAACTGTATATCTGCAGCAGAAACTTGTATATGAATATGGATTTTACCTAGTTTTAGTAAAGTTTA

Fln Alignment:

sp_v1.2_unigene25633___MMDSALRNSLEERDSFXXXXXXXXXXXXXXMSMLSLTN----RITSSTDDISVDLTGFFSXXXXXYGHEELSYGNMTDDAEEGVGDKLECFKSGSDSNEVVXXXXXXXXXXXXXXXXXXXXXACNAIGASVISGYNYKSPLSDLNKPLSKPIDIVYGDADQCRDFSQFKKXXXXXXXXXXXXEDWREKAWERKRDQALSEELSCDNNYFSDFQSSKTXXXXXXXXXXXXXPYSTLRRTSSTPRVRKLTNVDLDELKGCLDLGFGFNYEEMPELSNTLPALELCYAIGQQFQDDHHQKSSPVSTLDNMDSPNNEGYAQSPIANWKISSPGDHPQEVKERLKVWAQAVACTVRLCS
B8LL54_______________MMDSALRNTHEEMDSFDVEEDLELNEVEESMSLLSLSNTGSKEITSSTDDISADLTGFFSDDDGG-GPEEISYGNITDDAEEGVGDKWDYLKNGSDCNEVVTNASRLLRRRNLNGSRKKSSNACNAIGASVISGYNYKSPLSDLNKPPSKPIDIVYGDADQCRDFSQSKKTRSRRSLYRAIREDWREKAWERKRDQALSEEFSCDYNYFSDFQSSKTASDSASEEARADSPYSTLRRTTSTPRVRKFTNVDLDELKGCLDLGFGFNYEEMPELSNTLPALELCYAIGQKFQDDQHQKSSPVSTLDNMDSSNNEGYAQSPIANWKISSPGDHPQQVKERLKVWAQAVACTVRLCN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1756		16		83	0.994512

SSRs (tot: 2)

Start position	End position	Sequence	Length
213	225	AAAG AAAG AAAG A	13
404	419	TGA TGA TGA TGA TGA T	16

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain