SustainPineDB

Assembly Name: SustainPine v1.2

UniGene Name: sp_v1.2_unigene25572

Length: 2361 nt

Origin of reads: Biogeco_2 Uagpf Uma Biogeco_1

UniGene Fasta

>sp_v1.2_unigene25572
GCTCCATGTTGTTTTTGTTTTGGGGATATATAACCTGTATACCAATCGAAGACTTGTCTCTGACTGGACAACCTGAGAATCAAGATTACATGATATCCAAAGCAGTGAATGTCAGTTGTTGATTGCTTTATTTATTTATTTTTAAAATTTAATCTGTATCTGCATCAAGAGTTTTACATAAACAAGAAGAGCTAGCATAATTGCTTTGTTTCCAGCTTGAAGAGTATCTGTATCTTTCCAAAAAGAATCATTCTGGTTGAAGCTGCATAGTCAAGACCGATCAAAATGTAGAAACTTCTGCTAGATTGAACAATGTACTTCCATCTTGAAAGTTTTTATGAAGGAAAGTCCCTTATGGAGATACTGGTTAATTTGATCACAGACCCCACATACTCCTACCAGCTTGCTGACTGGTGGGCCAGGAAGTGGAAAGGGTACTCAGTGCGAAAAGATTGTTGAAAATTTTGGGTTTACACACCTAAGTGCTGGGGATCTTCTGCGTGCTGAGCTTAAATCAGGCTCAGAAAATGGAACGATGATTGAGAATATGATAAAGGAAGGAAAGATTGTTCCCTCAGAAGTGACGGTTAAGCTCTTACAAAAGGCAATGCATGAAAGTGAGAACGATAAATTTTTGATTGATGGGTTTCCTCGAAATGAAGAGAACCGTGCAGCATTTGAAAATGTTACAGGGATCCAACCGGATTTTATTCTATTCTTTGACTGTCCTGAGGAAGAGATGTTGAGGCGGCTCCTGAATAGGAACCAAGGCCGAGTTGATGACAATATAGAGACAATAACGAAGCGCTTCAAGGTCTTTTCTGAATCAAGTCTACCAGTTGTCAATTACTACGACTCAAAGGGGAAGGTTCGCAAGATCGATGCAGTAAAGACACGGGAAGATATCTTTGAGGATATTAAACTTCTTTTCGCAACTTACATTCAAGAAAAAGAGGAAGTAAAAGTTGGGTCTCTCAATTGAATTCAAGTATCATAGGCCTTATTGATAACAAGGGTGGTTTTAGTCATCACATATCGAAGCTACTGCAGTATGTCGTTATGCTGTTTAGTGTTATGTAGCAAATTGTACGAGTCCTTGTAGTCAGGACTGTAGGCCATATACAAGTCTTTTTTACTACCTAATTAAGGTTAGGATTATTAGAAATCATTTAGATGACAAGGCTTGTCGGGTGTGTTACATAGGCCTTTATATTGGTTCCTGTTGCAGTTCTTATTCTACAAGGGGCTAACTTCATAGTCTGTTACGGGATTGAACGAAGATATTTTAGTACTTTTGTTTCTTCTGTATGTAAAGGAGATGAAAATAATCTACTAATTTTTTATCTAAACCTCGTGCCGAATTCGGCACGAGGAAAGTTCTGTGCCTCCATGTGCTTGTATTGAGTCTGTTTCTCTTCAACACGGAGGCGAGGGAGAGCAGATTCTTTGACAAAAAGCCTGCTTACTACAACCCTGCTGGTGGATCAAATACTGTTGGGTACGGAGAAGGTTACACCAGGAGCGGTGTAGATAATGCTTTCGGAACCGGTTCCGGTAATGGCTACGGTTCCTACCGAGGCCAGGAAAACGGTGATGGTTATGTGTATGGCGACAGCGAGGCTTCCCGCGCTGGTTCTGCGAGCGAAGCCCGCTATGGAGAAGCGGGGAGCGGGTATCGTCCCGGGTCAGCTAGAGCTGGTGAGTACTATTCAGAGAATACGGGGGTCGGGAACGACGTGGGTGCTGGCTCAGGGTACCGTAGTGAAGCTTATGGTTCCGGCGCCGGCTCCGATTGGCATGGCCCTTATACCGGCTATGGGCAAGGTGGTGATCAGTACGACTCGGGCTACGCTGGACGTTCGGAAAGCAATGGCGCGTATCGTTCAGGTTATGGTGGTGGCTACGTTACCAGTTCCGGTAACCGTAATGGCTACGAAGCGGGCTCTGGCATTGGCAACGCAGAATATGTTGCCGACAATGGTTATTATAAGCAGACTCCTTAAACACATATTCAGGACTTTGGTAATAAGGCCTCTTAAAGTTGTGTATATGACTATTTGGGTTTCATTTCAGTTGTACTGATAACATAGCAAGCTTTCCATGTATCTGCTTTCGGAATTTTGTATCTAGGTTCCAATGCTATCAAGTTTAATCTGGTAACAGTTTATGATGTCTATGGAAAATCCATTTAATTTAGTTTGTTTTAAATGGATTAGTTTGGAGCCGATCACGACATAAATTGGATTTAAAGTCGAGTTATTTGTATAACAAAGCCCGTTGCAGTAGCATGTTCAAATTGCTATCAATTCCGATTGCAATTCCTTTAATAACGCATTATATATAAATAGATTACTAACCGCG

Ace file of the UniGene sp_v1.2_unigene25572

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Uridylate kinase plant, putative n=1 Tax=Ricinus communis RepID=B9SKI0_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	uridylate kinase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cytidylate kinase.	EC:2.7.4.14	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	89%
Blast2go	Metabolic pathways	01100		0.0	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	uridylate kinase activity	GO:0009041	Molecular Function	0.0	89%
Blast2go	cytidylate kinase activity	GO:0004127	Molecular Function	0.0	89%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A874

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 202 - 223

Fln protein: SQTPHTPTSLLTGGPGSGKGTQCEKIVENFGFTHLSAGDLLRAELKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMHESENDKFLIDGFPRNEENRAAFENVTGIQPDFILFFDCPEEEMLRRLLNRNQGRVDDNIETITKRFKVFSESSLPVVNYYDSKGKVRKIDAVKTREDIFEDIKLLFATYIQEKEEVKVGSLN*

Protein Length: 203

Fln nts: GCTCCATGTTGTTTTTGTTTTGGGGATATATAACCTGTATACCAATCGAAGACTTGTCTCTGACTGGACAACCTGAGAATCAAGATTACATGATATCCAAAGCAGTGAATGTCAGTTGTTGATTGCTTTATTTATTTATTTTTAAAATTTAATCTGTATCTGCATCAAGAGTTTTACATAAACAAGAAGAGCTAGCATAATTGCTTTGTTTCCAGCTTGAAGAGTATCTGTATCTTTCCAAAAAGAATCATTCTGGTTGAAGCTGCATAGTCAAGACCGATCAAAATGTAGAAACTTCTGCTAGATTGAACAATGTACTTCCATCTTGAAAGTTTTTATGAAGGAAAGTCCCTTATGGAGATACTGGTTAATTTGATCACAGACCCCACATACTCCTACCAGCTTGCTGACTGGTGGGCCAGGAAGTGGAAAGGGTACTCAGTGCGAAAAGATTGTTGAAAATTTTGGGTTTACACACCTAAGTGCTGGGGATCTTCTGCGTGCTGAGCTTAAATCAGGCTCAGAAAATGGAACGATGATTGAGAATATGATAAAGGAAGGAAAGATTGTTCCCTCAGAAGTGACGGTTAAGCTCTTACAAAAGGCAATGCATGAAAGTGAGAACGATAAATTTTTGATTGATGGGTTTCCTCGAAATGAAGAGAACCGTGCAGCATTTGAAAATGTTACAGGGATCCAACCGGATTTTATTCTATTCTTTGACTGTCCTGAGGAAGAGATGTTGAGGCGGCTCCTGAATAGGAACCAAGGCCGAGTTGATGACAATATAGAGACAATAACGAAGCGCTTCAAGGTCTTTTCTGAATCAAGTCTACCAGTTGTCAATTACTACGACTCAAAGGGGAAGGTTCGCAAGATCGATGCAGTAAAGACACGGGAAGATATCTTTGAGGATATTAAACTTCTTTTCGCAACTTACATTCAAGAAAAAGAGGAAGTAAAAGTTGGGTCTCTCAATTGA___ATTCAAGTATCATAGGCCTTATTGATAACAAGGGTGGTTTTAGTCATCACATATCGAAGCTACTGCAGTATGTCGTTATGCTGTTTAGTGTTATGTAGCAAATTGTACGAGTCCTTGTAGTCAGGACTGTAGGCCATATACAAGTCTTTTTTACTACCTAATTAAGGTTAGGATTATTAGAAATCATTTAGATGACAAGGCTTGTCGGGTGTGTTACATAGGCCTTTATATTGGTTCCTGTTGCAGTTCTTATTCTACAAGGGGCTAACTTCATAGTCTGTTACGGGATTGAACGAAGATATTTTAGTACTTTTGTTTCTTCTGTATGTAAAGGAGATGAAAATAATCTACTAATTTTTTATCTAAACCTCGTGCCGAATTCGGCACGAGGAAAGTTCTGTGCCTCCATGTGCTTGTATTGAGTCTGTTTCTCTTCAACACGGAGGCGAGGGAGAGCAGATTCTTTGACAAAAAGCCTGCTTACTACAACCCTGCTGGTGGATCAAATACTGTTGGGTACGGAGAAGGTTACACCAGGAGCGGTGTAGATAATGCTTTCGGAACCGGTTCCGGTAATGGCTACGGTTCCTACCGAGGCCAGGAAAACGGTGATGGTTATGTGTATGGCGACAGCGAGGCTTCCCGCGCTGGTTCTGCGAGCGAAGCCCGCTATGGAGAAGCGGGGAGCGGGTATCGTCCCGGGTCAGCTAGAGCTGGTGAGTACTATTCAGAGAATACGGGGGTCGGGAACGACGTGGGTGCTGGCTCAGGGTACCGTAGTGAAGCTTATGGTTCCGGCGCCGGCTCCGATTGGCATGGCCCTTATACCGGCTATGGGCAAGGTGGTGATCAGTACGACTCGGGCTACGCTGGACGTTCGGAAAGCAATGGCGCGTATCGTTCAGGTTATGGTGGTGGCTACGTTACCAGTTCCGGTAACCGTAATGGCTACGAAGCGGGCTCTGGCATTGGCAACGCAGAATATGTTGCCGACAATGGTTATTATAAGCAGACTCCTTAAACACATATTCAGGACTTTGGTAATAAGGCCTCTTAAAGTTGTGTATATGACTATTTGGGTTTCATTTCAGTTGTACTGATAACATAGCAAGCTTTCCATGTATCTGCTTTCGGAATTTTGTATCTAGGTTCCAATGCTATCAAGTTTAATCTGGTAACAGTTTATGATGTCTATGGAAAATCCATTTAATTTAGTTTGTTTTAAATGGATTAGTTTGGAGCCGATCACGACATAAATTGGATTTAAAGTCGAGTTATTTGTATAACAAAGCCCGTTGCAGTAGCATGTTCAAATTGCTATCAATTCCGATTGCAATTCCTTTAATAACGCATTATATATAAATAGATTACTAACCGCG

Fln Alignment:

sp_v1.2_unigene25572___GGPGSGKGTQCEKIVENFGFTHLSAGDLLRAELKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMHESENDKFLIDGFPRNEENRAAFENVTGIQPDFILFFDCPEEEMLRRLLNRNQGRVDDNIETITKRFKVFSESSLPVVNYYDSKGKVRKIDAVKTREDIFEDIKLLFATYIQEKEEVKVGSLN
D5A874_______________GGPGSGKGTQCEKIVENFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMQESENDKFLIDGFPRNEENRAAFENVTGIQPEFILFFNCPEEEMLKRLLNRNQGRVDDNVETITKRFRVFSESSLPVVNYYDSKGKVRKIDAVKSKEDVFENIKLLFAPFIQEKEEVEVGSLN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
2222			10	90	0.90298
2229	10		90		0.90298
2245	10		90		0.90298
2265		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
127	141	TTTA TTTA TTTA TTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain